PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49151-49200 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.6024 | 0.0000 | 0.0000 | 56 | 9240 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.8608 | 77.6154 | 96.0663 | 66.4017 | 16997 | 4902 | 16973 | 695 | 593 | 85.3237 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.9492 | 55.4636 | 62.9024 | 64.8301 | 17420 | 13988 | 17390 | 10256 | 9749 | 95.0566 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 72.2252 | 97.0052 | 57.5294 | 65.0968 | 13345 | 412 | 13375 | 9874 | 9432 | 95.5236 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.5382 | 0.0000 | 0.0000 | 50 | 9241 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 63.0485 | 48.1459 | 91.3123 | 63.3492 | 4025 | 4335 | 4015 | 382 | 317 | 82.9843 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 86.1643 | 84.6457 | 87.7384 | 69.2630 | 645 | 117 | 644 | 90 | 80 | 88.8889 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.2936 | 98.1609 | 83.5938 | 71.7906 | 427 | 8 | 428 | 84 | 76 | 90.4762 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.4493 | 0.0000 | 0.0000 | 1 | 68 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 61.2565 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 77.7778 | 70.0000 | 87.5000 | 99.6063 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 85.7143 | 85.7143 | 85.7143 | 99.5760 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.7375 | 1 | 1 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.3062 | 89.0402 | 89.5738 | 76.8026 | 1373 | 169 | 1366 | 159 | 137 | 86.1635 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.3313 | 99.3492 | 86.2394 | 78.7375 | 916 | 6 | 915 | 146 | 129 | 88.3562 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.7027 | 0.0000 | 0.0000 | 2 | 72 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.7334 | 83.3333 | 97.1983 | 70.7071 | 455 | 91 | 451 | 13 | 8 | 61.5385 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 90.4890 | 90.6867 | 90.2922 | 79.9205 | 964 | 99 | 958 | 103 | 83 | 80.5825 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 92.9441 | 99.3912 | 87.2825 | 81.4778 | 653 | 4 | 652 | 95 | 78 | 82.1053 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 5.4054 | 0.0000 | 0.0000 | 2 | 35 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.0772 | 83.7398 | 97.4522 | 74.9001 | 309 | 60 | 306 | 8 | 5 | 62.5000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 33.7984 | 28.7018 | 41.0959 | 58.9386 | 692 | 1719 | 690 | 989 | 957 | 96.7644 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 55.0165 | 87.3144 | 40.1609 | 56.7914 | 647 | 94 | 649 | 967 | 945 | 97.7249 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2324 | 0.0000 | 0.0000 | 3 | 1288 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 18.9387 | 11.0818 | 65.0794 | 81.9484 | 42 | 337 | 41 | 22 | 12 | 54.5455 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.9130 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 98.7179 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 45.8395 | 42.0033 | 50.4468 | 47.0151 | 8651 | 11945 | 8637 | 8484 | 8329 | 98.1730 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 62.6517 | 96.2893 | 46.4314 | 47.0193 | 7110 | 274 | 7143 | 8241 | 8121 | 98.5439 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.5435 | 0.0000 | 0.0000 | 44 | 8051 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 22 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | * | 59.2593 | 53.3333 | 66.6667 | 95.5720 | 8 | 7 | 8 | 4 | 3 | 75.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 50.0000 | 44.4444 | 57.1429 | 96.9957 | 4 | 5 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 70.7071 | 66.0377 | 76.0870 | 91.4019 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | het | 75.0000 | 80.0000 | 70.5882 | 92.6407 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 83.5616 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 70.7071 | 66.0377 | 76.0870 | 92.4959 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | het | 75.0000 | 80.0000 | 70.5882 | 93.5484 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 86.0465 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 70.7071 | 66.0377 | 76.0870 | 92.6518 | 35 | 18 | 35 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | het | 75.0000 | 80.0000 | 70.5882 | 93.6803 | 24 | 6 | 24 | 10 | 6 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||