PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49001-49050 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.7554 | 24.6259 | 29.2880 | 56.6011 | 181 | 554 | 181 | 437 | 436 | 99.7712 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 38.2525 | 82.8402 | 24.8677 | 55.3895 | 140 | 29 | 141 | 426 | 425 | 99.7653 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.2278 | 0.0000 | 0.0000 | 1 | 438 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 67.0927 | 72.4138 | 62.5000 | 88.2086 | 63 | 24 | 65 | 39 | 20 | 51.2821 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 72.5832 | 98.0769 | 57.6087 | 86.0395 | 51 | 1 | 53 | 39 | 20 | 51.2821 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 68.5714 | 52.1739 | 100.0000 | 94.6188 | 12 | 11 | 12 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.1765 | 66.1765 | 66.1765 | 97.5801 | 45 | 23 | 45 | 23 | 13 | 56.5217 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.0000 | 77.2727 | 60.7143 | 97.3585 | 34 | 10 | 34 | 22 | 12 | 54.5455 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.4815 | 73.3333 | 91.6667 | 98.2609 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 52.6126 | 49.5308 | 56.1033 | 72.8835 | 475 | 484 | 478 | 374 | 353 | 94.3850 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 66.8212 | 95.0125 | 51.5313 | 71.7775 | 381 | 20 | 387 | 364 | 344 | 94.5055 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.3049 | 0.0000 | 0.0000 | 1 | 327 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 55.8190 | 40.4348 | 90.0990 | 79.0021 | 93 | 137 | 91 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.6434 | 24.0260 | 32.5431 | 70.1799 | 148 | 468 | 151 | 313 | 312 | 99.6805 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.1741 | 82.9268 | 31.0421 | 68.1047 | 136 | 28 | 140 | 311 | 310 | 99.6785 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 350 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 50.5051 | 47.7707 | 53.5714 | 69.8925 | 75 | 82 | 75 | 65 | 61 | 93.8462 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 61.8785 | 91.8033 | 46.6667 | 69.3095 | 56 | 5 | 56 | 64 | 60 | 93.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 51 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 58.4615 | 42.2222 | 95.0000 | 72.9730 | 19 | 26 | 19 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.9302 | 19.5652 | 22.5000 | 62.6168 | 9 | 37 | 9 | 31 | 31 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 27.2727 | 75.0000 | 16.6667 | 61.7021 | 6 | 2 | 6 | 30 | 30 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 25 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 35.2941 | 23.0769 | 75.0000 | 69.2308 | 3 | 10 | 3 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 70.1754 | 71.4286 | 68.9655 | 98.1611 | 20 | 8 | 20 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 72.7273 | 84.2105 | 64.0000 | 97.6460 | 16 | 3 | 16 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 99.2233 | 4 | 1 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | * | 59.7750 | 58.6207 | 60.9756 | 96.0271 | 51 | 36 | 50 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.0000 | 91.3043 | 56.7568 | 95.0634 | 42 | 4 | 42 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 3.8462 | 0.0000 | 0.0000 | 1 | 25 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 69.5652 | 53.3333 | 100.0000 | 98.5841 | 8 | 7 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 61.1538 | 60.0000 | 62.3529 | 96.1223 | 54 | 36 | 53 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | het | 70.9677 | 91.6667 | 57.8947 | 95.2970 | 44 | 4 | 44 | 32 | 22 | 68.7500 | |