PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 976 977 978 979 980 981 982 983 984 ... 1720 1721 » 48951-49000 / 86044 show all
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000	0.0000	0.0000	0	2	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	*	39.0244	34.0426	45.7143	78.5276	16	31	16	19	18	94.7368
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	het	58.1470	86.6667	43.7500	77.4648	13	2	14	18	17	94.4444
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	3.5714	0.0000	0.0000	1	27	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	57.1429	50.0000	66.6667	85.7143	2	2	2	1	1	100.0000
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	55.0492	45.3608	70.0000	75.3208	176	212	175	75	71	94.6667
ghariani-varprowl	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	het	76.1553	85.1190	68.8995	75.1486	143	25	144	65	61	93.8462
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	5.2632	0.0000	0.0000	1	18	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	66.2963	49.5845	100.0000	63.8554	179	182	180	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	82.6345	81.9473	83.3333	60.9010	404	89	405	81	78	96.2963
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	85.9388	97.7778	76.6571	63.2415	264	6	266	81	78	96.2963
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	8.3333	0.0000	0.0000	1	11	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	79.4286	65.8768	100.0000	53.5117	139	72	139	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	30.1078	27.6176	33.0916	63.8123	364	954	365	738	734	99.4580
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	43.9535	83.9779	29.7665	62.1084	304	58	306	722	718	99.4460
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	0.2869	0.0000	0.0000	2	695	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	34.8632	22.3938	78.6667	77.6119	58	201	59	16	16	100.0000
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	36.5445	33.8941	39.6445	65.7686	1088	2122	1093	1664	1651	99.2188
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	48.4627	89.8402	33.1807	64.3673	787	89	797	1605	1594	99.3146
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	0.2474	0.0000	0.0000	4	1613	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	55.3485	41.4226	83.3803	72.9627	297	420	296	59	57	96.6102
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	40.7441	38.0238	43.8836	68.6231	735	1198	739	945	935	98.9418
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	51.7650	93.7381	35.7550	67.8055	494	33	502	902	894	99.1131
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	0.2119	0.0000	0.0000	2	942	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	64.2160	51.7316	84.6429	72.1670	239	223	237	43	41	95.3488
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	44.4518	41.8244	47.4313	70.0067	1701	2366	1708	1893	1866	98.5737
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	56.0346	92.0301	40.2800	69.6241	1224	106	1237	1834	1809	98.6369
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	0.3032	0.0000	0.0000	5	1644	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	58.3031	43.3824	88.8679	72.0464	472	616	471	59	57	96.6102
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	47.8508	44.9290	51.1791	74.3426	2246	2753	2257	2153	2109	97.9563
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	60.3322	92.2485	44.8239	74.0840	1678	141	1693	2084	2043	98.0326
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	0.2589	0.0000	0.0000	5	1926	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	59.8657	45.0761	89.0995	75.7842	563	686	564	69	66	95.6522
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	47.5210	44.6987	50.7237	69.1756	801	991	806	783	771	98.4674
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	59.0682	92.1182	43.4716	69.7982	561	48	566	736	726	98.6413
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	0.2551	0.0000	0.0000	2	782	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	69.6305	59.6491	83.6237	65.9953	238	161	240	47	45	95.7447

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge