PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 972 973 974 975 976 977 978 979 980 ... 1720 1721 » 48751-48800 / 86044 show all
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000	0.0000	0.0000	0	872	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	7.1006	3.7267	75.0000	81.8182	6	155	6	2	2	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	81.0304	79.3233	82.8125	82.8188	211	55	212	44	39	88.6364
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	87.8646	98.7097	79.1667	84.0000	153	2	152	40	37	92.5000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt		0.0000	0.0000	0.0000	0	37	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	85.3778	78.3784	93.7500	77.9310	58	16	60	4	2	50.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	69.5652	66.6667	72.7273	99.4295	38	19	40	15	9	60.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	77.0340	78.5714	75.5556	99.4804	33	9	34	11	6	54.5455
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000	0.0000	0.0000	0	9	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	69.7674	83.3333	60.0000	98.9806	5	1	6	4	3	75.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	56.6451	52.8614	61.0122	54.6408	1949	1738	1953	1248	1228	98.3974
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	72.0736	97.5227	57.1579	53.3629	1614	41	1625	1218	1207	99.0969
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	0.0000	0.5922	0.0000	0.0000	7	1175	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	54.3046	38.5882	91.6201	62.7471	328	522	328	30	21	70.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	26.8490	23.6502	31.0484	54.2013	311	1004	308	684	676	98.8304
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	45.3799	89.3939	30.4082	52.3346	295	35	298	682	674	98.8270
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	0.7566	0.0000	0.0000	6	787	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt	9.8039	5.2083	83.3333	89.0909	10	182	10	2	2	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	53.0600	50.0000	56.5189	40.9091	865	865	867	667	662	99.2504
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	67.8919	98.5775	51.7751	39.8577	693	10	700	652	649	99.5399
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	0.0000	0.6849	0.0000	0.0000	4	580	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	53.6664	37.9233	91.7582	47.7011	168	275	167	15	13	86.6667
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	17.7419	15.4930	20.7547	46.1929	22	120	22	84	84	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	het	32.5581	87.5000	20.0000	45.0262	21	3	21	84	84	100.0000
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	97	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	homalt	9.0909	4.7619	100.0000	83.3333	1	20	1	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m0_e0	*	74.8768	73.7864	76.0000	91.3420	76	27	76	24	21	87.5000
ghariani-varprowl	INDEL	D6_15	map_l100_m0_e0	het	82.5175	98.3333	71.0843	91.9024	59	1	59	24	21	87.5000
ghariani-varprowl	INDEL	D6_15	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	19	0	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m0_e0	homalt	82.9268	70.8333	100.0000	86.9231	17	7	17	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m1_e0	*	68.3429	66.2791	70.5394	88.5238	171	87	170	71	65	91.5493
ghariani-varprowl	INDEL	D6_15	map_l100_m1_e0	het	77.2586	98.4127	63.5897	89.5161	124	2	124	71	65	91.5493
ghariani-varprowl	INDEL	D6_15	map_l100_m1_e0	hetalt	0.0000	1.4706	0.0000	0.0000	1	67	0	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m1_e0	homalt	83.6364	71.8750	100.0000	80.8333	46	18	46	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e0	*	68.8299	66.6667	71.1382	89.1868	176	88	175	71	65	91.5493
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e0	het	77.5758	97.7099	64.3216	90.1143	128	3	128	71	65	91.5493
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e0	hetalt	0.0000	1.4706	0.0000	0.0000	1	67	0	0	0
ghariani-varprowl	INDEL	D6_15	map_l100_m2_e0	homalt	83.9286	72.3077	100.0000	82.0611	47	18	47	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge