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Explore HG002 comparison results
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Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
48701-48750 / 86044 show all | |||||||||||||||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 42.9887 | 39.8223 | 46.7021 | 60.4305 | 7037 | 10634 | 7031 | 8024 | 7936 | 98.9033 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 58.4037 | 95.8604 | 41.9946 | 60.0631 | 5604 | 242 | 5634 | 7782 | 7720 | 99.2033 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.3971 | 0.0000 | 0.0000 | 32 | 8027 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 51.7959 | 37.2013 | 85.2349 | 63.2016 | 1401 | 2365 | 1397 | 242 | 216 | 89.2562 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 70.4495 | 67.4641 | 73.7113 | 75.8706 | 141 | 68 | 143 | 51 | 50 | 98.0392 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 82.0991 | 93.7008 | 73.0539 | 75.4412 | 119 | 8 | 122 | 45 | 44 | 97.7778 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 39 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 61.7234 | 51.1628 | 77.7778 | 78.2258 | 22 | 21 | 21 | 6 | 6 | 100.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5348 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2684 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.8567 | 85.0746 | 86.6532 | 64.3732 | 855 | 150 | 857 | 132 | 126 | 95.4545 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 89.5152 | 98.0903 | 82.3188 | 67.4835 | 565 | 11 | 568 | 122 | 117 | 95.9016 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 1.8182 | 0.0000 | 0.0000 | 1 | 54 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2813 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.0745 | 87.7173 | 88.4346 | 62.4232 | 757 | 106 | 757 | 99 | 93 | 93.9394 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.6015 | 98.9733 | 83.5355 | 66.2376 | 482 | 5 | 482 | 95 | 90 | 94.7368 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 3.0303 | 0.0000 | 0.0000 | 1 | 32 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.9666 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 24.2608 | 21.2264 | 28.3074 | 52.9088 | 585 | 2171 | 582 | 1474 | 1470 | 99.7286 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 41.3724 | 88.2160 | 27.0230 | 51.3251 | 539 | 72 | 541 | 1461 | 1457 | 99.7262 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.2342 | 0.0000 | 0.0000 | 4 | 1704 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 17.0622 | 9.6110 | 75.9259 | 78.6561 | 42 | 395 | 41 | 13 | 13 | 100.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 89.4737 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 35.3630 | 32.4556 | 38.8425 | 53.3428 | 4474 | 9311 | 4470 | 7038 | 6992 | 99.3464 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 51.3899 | 95.4252 | 35.1633 | 52.7695 | 3692 | 177 | 3715 | 6850 | 6821 | 99.5766 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.3656 | 0.0000 | 0.0000 | 26 | 7086 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 40.3388 | 26.9615 | 80.0636 | 58.9286 | 756 | 2048 | 755 | 188 | 171 | 90.9574 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 37.9377 | 35.2193 | 41.1108 | 54.0150 | 3903 | 7179 | 3901 | 5588 | 5544 | 99.2126 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 53.5870 | 96.7318 | 37.0581 | 53.6813 | 3167 | 107 | 3187 | 5413 | 5386 | 99.5012 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.4046 | 0.0000 | 0.0000 | 22 | 5416 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 43.8171 | 30.1266 | 80.3150 | 57.0116 | 714 | 1656 | 714 | 175 | 158 | 90.2857 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 39.0121 | 35.9892 | 42.5893 | 55.2279 | 5321 | 9464 | 5316 | 7166 | 7112 | 99.2464 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 54.4494 | 95.7490 | 38.0411 | 54.7898 | 4257 | 189 | 4280 | 6971 | 6935 | 99.4836 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3624 | 0.0000 | 0.0000 | 26 | 7148 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 47.1992 | 32.7962 | 84.1592 | 58.8707 | 1038 | 2127 | 1036 | 195 | 177 | 90.7692 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 42.9887 | 39.8223 | 46.7021 | 60.4305 | 7037 | 10634 | 7031 | 8024 | 7936 | 98.9033 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 58.4037 | 95.8604 | 41.9946 | 60.0631 | 5604 | 242 | 5634 | 7782 | 7720 | 99.2033 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3971 | 0.0000 | 0.0000 | 32 | 8027 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 51.7959 | 37.2013 | 85.2349 | 63.2016 | 1401 | 2365 | 1397 | 242 | 216 | 89.2562 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 38.9448 | 36.3079 | 41.9946 | 48.7568 | 3434 | 6024 | 3436 | 4746 | 4690 | 98.8201 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 53.4542 | 96.4142 | 36.9777 | 47.8842 | 2635 | 98 | 2655 | 4525 | 4487 | 99.1602 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.3982 | 0.0000 | 0.0000 | 19 | 4753 | 0 | 0 | 0 | ||
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.8148 | 39.9386 | 77.9441 | 54.2466 | 780 | 1173 | 781 | 221 | 203 | 91.8552 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 10.6794 | 9.1448 | 12.8329 | 47.1191 | 108 | 1073 | 106 | 720 | 717 | 99.5833 | |
ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.7663 | 68.9189 | 12.2249 | 46.1133 | 102 | 46 | 100 | 718 | 715 | 99.5822 |