PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48301-48350 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | het | 97.2721 | 98.6880 | 95.8962 | 82.5739 | 12712 | 169 | 12712 | 544 | 123 | 22.6103 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0272 | 98.2405 | 99.8266 | 73.7644 | 7482 | 134 | 7482 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | * | 97.8866 | 98.4558 | 97.3240 | 80.2448 | 20403 | 320 | 20403 | 561 | 134 | 23.8859 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | het | 97.2811 | 98.6938 | 95.9083 | 82.6594 | 12845 | 170 | 12845 | 548 | 124 | 22.6277 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0304 | 98.2452 | 99.8283 | 73.7883 | 7558 | 135 | 7558 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | * | 94.5118 | 96.7883 | 92.3398 | 94.5924 | 1326 | 44 | 1326 | 110 | 17 | 15.4545 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | het | 93.0734 | 97.1092 | 89.3596 | 95.1651 | 907 | 27 | 907 | 108 | 15 | 13.8889 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 92.4308 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | * | 96.0095 | 97.2046 | 94.8434 | 90.8840 | 4451 | 128 | 4451 | 242 | 52 | 21.4876 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | het | 94.9386 | 97.6415 | 92.3813 | 91.9764 | 2898 | 70 | 2898 | 239 | 49 | 20.5021 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.1283 | 95.9484 | 92.3759 | 88.5876 | 521 | 22 | 521 | 43 | 12 | 27.9070 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.5860 | 98.4663 | 89.1667 | 91.2643 | 321 | 5 | 321 | 39 | 10 | 25.6410 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.0874 | 96.1538 | 98.0392 | 75.1523 | 200 | 8 | 200 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | * | 93.9359 | 94.3241 | 93.5508 | 86.7120 | 1263 | 76 | 1262 | 87 | 31 | 35.6322 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4317 | 98.3269 | 90.8333 | 89.6462 | 764 | 13 | 763 | 77 | 26 | 33.7662 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | homalt | 97.1762 | 96.3320 | 98.0354 | 75.0368 | 499 | 19 | 499 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | * | 93.7816 | 94.2982 | 93.2706 | 87.7493 | 1290 | 78 | 1289 | 93 | 34 | 36.5591 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 94.1968 | 98.3607 | 90.3712 | 90.4265 | 780 | 13 | 779 | 83 | 29 | 34.9398 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | homalt | 97.0504 | 96.0452 | 98.0769 | 77.1629 | 510 | 21 | 510 | 10 | 5 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.0093 | 96.1111 | 97.9245 | 77.2337 | 519 | 21 | 519 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | * | 95.0715 | 96.4516 | 93.7304 | 91.7974 | 299 | 11 | 299 | 20 | 6 | 30.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 95.0000 | 98.9583 | 91.3462 | 93.7008 | 190 | 2 | 190 | 18 | 5 | 27.7778 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.8889 | 95.6140 | 98.1982 | 81.0903 | 109 | 5 | 109 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.5107 | 95.4217 | 93.6170 | 89.0315 | 792 | 38 | 792 | 54 | 19 | 35.1852 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 94.1757 | 98.1481 | 90.5123 | 91.5531 | 477 | 9 | 477 | 50 | 17 | 34.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 17 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | * | 94.2808 | 95.2159 | 93.3638 | 89.9679 | 816 | 41 | 816 | 58 | 21 | 36.2069 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 94.0270 | 98.1891 | 90.2033 | 92.2978 | 488 | 9 | 488 | 53 | 18 | 33.9623 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.3294 | 96.1877 | 98.4985 | 80.2725 | 328 | 13 | 328 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | * | 94.3117 | 95.2874 | 93.3559 | 90.0716 | 829 | 41 | 829 | 59 | 21 | 35.5932 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 94.0622 | 98.2283 | 90.2351 | 92.3365 | 499 | 9 | 499 | 54 | 18 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.3451 | 96.2099 | 98.5075 | 80.6134 | 330 | 13 | 330 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 93.8547 | 95.4545 | 92.3077 | 94.3089 | 168 | 8 | 168 | 14 | 4 | 28.5714 | |