PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
48001-48050 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | het | 85.7424 | 98.1818 | 76.1006 | 89.7593 | 756 | 14 | 968 | 304 | 95 | 31.2500 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 94.7515 | 91.3978 | 98.3607 | 80.9715 | 340 | 32 | 420 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | * | 83.0230 | 95.8478 | 73.2252 | 92.0420 | 277 | 12 | 361 | 132 | 21 | 15.9091 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | het | 79.3587 | 98.0198 | 66.6667 | 92.5863 | 198 | 4 | 262 | 131 | 20 | 15.2672 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 94.6075 | 90.5882 | 99.0000 | 88.8143 | 77 | 8 | 99 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | * | 86.5802 | 95.6764 | 79.0634 | 89.6914 | 686 | 31 | 861 | 228 | 53 | 23.2456 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | het | 83.7248 | 98.3402 | 72.8916 | 90.7572 | 474 | 8 | 605 | 225 | 50 | 22.2222 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.6446 | 90.7895 | 98.8417 | 83.6490 | 207 | 21 | 256 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | * | 87.0891 | 95.8060 | 79.8261 | 90.0965 | 731 | 32 | 918 | 232 | 55 | 23.7069 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | het | 84.3060 | 98.2490 | 73.8286 | 91.1437 | 505 | 9 | 646 | 229 | 52 | 22.7074 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9644 | 91.3223 | 98.9091 | 84.1224 | 221 | 21 | 272 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | * | 86.9569 | 95.6298 | 79.7263 | 90.1392 | 744 | 34 | 932 | 237 | 56 | 23.6287 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | het | 84.1666 | 98.0843 | 73.7079 | 91.1768 | 512 | 10 | 656 | 234 | 53 | 22.6496 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 6 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8670 | 91.1290 | 98.9247 | 84.2195 | 226 | 22 | 276 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | * | 74.2857 | 100.0000 | 59.0909 | 96.7105 | 46 | 0 | 65 | 45 | 8 | 17.7778 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | het | 68.9655 | 100.0000 | 52.6316 | 96.7037 | 33 | 0 | 50 | 45 | 8 | 17.7778 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7532 | 13 | 0 | 15 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | * | 79.8265 | 97.6608 | 67.5000 | 94.8077 | 167 | 4 | 216 | 104 | 17 | 16.3462 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | het | 73.8070 | 99.0991 | 58.8000 | 95.2866 | 110 | 1 | 147 | 103 | 16 | 15.5340 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 96.6161 | 94.7368 | 98.5714 | 91.8510 | 54 | 3 | 69 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | * | 80.1166 | 97.8261 | 67.8363 | 95.0015 | 180 | 4 | 232 | 110 | 18 | 16.3636 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | het | 74.0028 | 99.1736 | 59.0226 | 95.4854 | 120 | 1 | 157 | 109 | 17 | 15.5963 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 96.8071 | 95.0000 | 98.6842 | 92.0000 | 57 | 3 | 75 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | * | 80.0482 | 97.8378 | 67.7326 | 95.1053 | 181 | 4 | 233 | 111 | 18 | 16.2162 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | het | 73.8307 | 99.1803 | 58.8015 | 95.5890 | 121 | 1 | 157 | 110 | 17 | 15.4545 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 96.8153 | 95.0000 | 98.7013 | 92.1026 | 57 | 3 | 76 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | * | 89.9255 | 93.9643 | 86.2197 | 83.0558 | 3316 | 213 | 3729 | 596 | 269 | 45.1342 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | het | 89.3607 | 98.0237 | 82.1046 | 85.3259 | 2232 | 45 | 2606 | 568 | 243 | 42.7817 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 47.6190 | 0.0000 | 0.0000 | 40 | 44 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_siren | homalt | 93.2963 | 89.3836 | 97.5673 | 70.4493 | 1044 | 124 | 1123 | 28 | 26 | 92.8571 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | * | 90.1625 | 92.8377 | 87.6372 | 94.9594 | 1024 | 79 | 1198 | 169 | 138 | 81.6568 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | het | 90.8046 | 97.6879 | 84.8276 | 95.5414 | 676 | 16 | 861 | 154 | 123 | 79.8701 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 71.1538 | 0.0000 | 0.0000 | 37 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdup | homalt | 90.9566 | 86.6295 | 95.7386 | 91.9173 | 311 | 48 | 337 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9955 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9947 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | * | 63.5213 | 63.1579 | 63.8889 | 58.1395 | 12 | 7 | 23 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | het | 70.7447 | 87.5000 | 59.3750 | 58.9744 | 7 | 1 | 19 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||