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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
47901-47950 / 86044 show all
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
79.0331
95.6616
67.3294
69.9860
882401727838592
70.6444
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
58.1081
0.0000
0.0000
4331000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
79.0433
68.6813
93.0876
67.1461
3751714043028
93.3333
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
79.0223
86.0771
73.0363
71.1846
9151481590587460
78.3646
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
81.2017
96.8037
69.9308
71.0611
636211314565439
77.6991
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
54.0541
0.0000
0.0000
2017000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
79.8588
70.1897
92.6174
71.9397
2591102762221
95.4545
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
38.8587
37.6192
40.1826
50.2147
9071504158423581680
71.2468
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
50.1574
67.0715
40.0560
49.5050
497244157323541678
71.2829
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
31.0612
0.0000
0.0000
401890000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
4.6004
2.3747
73.3333
89.3617
93701142
50.0000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
01000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
01000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
59.6473
59.7203
59.5745
39.9758
123008296177241202710545
87.6777
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
70.3688
88.2855
58.4973
39.9312
6519865168561195910481
87.6411
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
60.7906
0.0000
0.0000
49213174000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
28.4562
16.8067
92.7350
41.3166
86042578686864
94.1176
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
62.4312
62.4952
62.3673
38.8416
1141168481616097518900
91.2727
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
73.0196
90.4177
61.2365
38.8818
60396401530396878838
91.2357
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
66.2224
0.0000
0.0000
45212306000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
30.0306
17.9045
93.0510
37.7282
85139028576462
96.8750
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
61.1245
61.5551
60.6998
48.1943
136968554199661292711157
86.3077
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
71.1558
89.0067
59.2690
47.6573
7473923186651282711064
86.2556
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
60.7121
0.0000
0.0000
49623211000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
35.8293
22.1968
92.8622
57.9026
12614420130110093
93.0000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
64.0892
66.0415
62.2490
58.2196
2074110665298491810214698
81.1954
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.2778
90.5780
60.1295
57.9997
124591296270331792514535
81.0879
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
60.0151
0.0000
0.0000
55763715000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
48.1662
32.3684
94.0862
61.2657
270656542816177163
92.0904
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.9708
71.4018
70.5450
38.3153
1752270182227693018410
90.4204
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
78.0403
92.7260
67.3704
39.0451
96507571892391658275
90.2891
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
66.8748
0.0000
0.0000
46052281000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
61.3722
45.0807
96.1020
31.7355
326739803353136135
99.2647
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
26.4385
22.6686
31.7125
37.5578
158539300646514
79.5666
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
37.8106
46.6667
31.7797
37.1505
6372300644513
79.6584
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
19.3483
0.0000
0.0000
95396000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
84.6154
071021
50.0000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.0746
98.4739
97.6786
54.4653
2497238725036595449
75.4622
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
97.8939
99.4854
96.3524
57.0732
146947615268578432
74.7405
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
92.9440
0.0000
0.0000
38229000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.5107
97.2293
99.8263
49.4968
989628297681717
100.0000
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
75.0000
99.9757
012173
42.8571
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
0.0000
74.0741
99.9731
002073
42.8571
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
01000