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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
47851-47900 / 86044 show all
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.7149
82.5790
55.9638
44.4510
1332281581845784118
89.9519
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
54.7020
0.0000
0.0000
25422105000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
27.3019
16.0247
92.1569
56.7063
1045452352018
90.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
59.5875
61.0924
58.1549
41.9454
36242308562340463831
94.6861
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
68.4924
85.2853
57.2248
41.5985
1136196539040293815
94.6885
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
59.2455
0.0000
0.0000
23871642000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
29.7335
17.6883
93.2000
52.5617
1014702331716
94.1176
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
60.1668
61.4104
58.9725
57.4072
51643245728950714386
86.4918
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.0793
87.2712
57.1635
56.5737
2146313673550474364
86.4672
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
54.1073
0.0000
0.0000
25822190000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
53.4023
37.0119
95.8478
69.3856
4367425542422
91.6667
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
64.3466
65.7191
63.0303
66.4559
1056555111334178256132
78.3642
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.3469
89.3925
59.3632
66.7339
57396811135577736089
78.3353
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
50.9584
0.0000
0.0000
30042891000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.7166
48.4446
97.4485
63.6006
1822193919865243
82.6923
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
68.0107
68.2833
67.7403
40.7190
391418181093652084870
93.5100
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
75.4653
90.5356
64.6962
41.2162
1234129945651604823
93.4690
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
62.8647
0.0000
0.0000
23921413000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
66.8725
51.0638
96.8586
35.5002
28827614804847
97.9167
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
23.0092
16.5049
37.9747
64.0909
34172304932
65.3061
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
49.3293
70.3704
37.9747
63.2558
198304932
65.3061
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
8.3799
0.0000
0.0000
15164000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
59.2593
72.7273
50.0000
99.8444
83222
100.0000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
63.6364
87.5000
50.0000
99.8246
71222
100.0000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
50.0000
100.0000
11000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
80.4680
83.0514
78.0406
69.2847
5351010920631201776115073
84.8657
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
83.2099
96.3623
73.2167
70.3492
320261209478611750814830
84.7041
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
66.9535
0.0000
0.0000
62243072000
gduggal-snapvardINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
81.5781
69.6835
98.3690
63.8094
15260663915259253243
96.0474
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
64.0892
66.0415
62.2490
58.2196
2074110665298491810214698
81.1954
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
72.2778
90.5780
60.1295
57.9997
124591296270331792514535
81.0879
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
60.0151
0.0000
0.0000
55763715000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
48.1662
32.3684
94.0862
61.2657
270656542816177163
92.0904
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
74.5086
80.7087
69.1932
71.0477
615147849378216
57.1429
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
76.4847
93.7931
64.5692
72.8444
40827667366206
56.2842
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
56.5217
0.0000
0.0000
3930000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
76.8743
65.1163
93.8144
55.2995
168901821210
83.3333
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
61.5385
80.0000
50.0000
99.8383
82222
100.0000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
99.8173
70222
100.0000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
50.0000
100.0000
11000
gduggal-snapvardINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
77.1166
84.3061
71.0570
69.6058
13002422131868620
71.4286