PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47651-47700 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5229 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 11.1111 | 98.4456 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 98.9796 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.5753 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.5938 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 97.4522 | 0 | 0 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 31.0345 | 97.8097 | 0 | 0 | 9 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 20.0000 | 97.8430 | 0 | 0 | 5 | 20 | 1 | 5.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 286 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 22 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.2898 | 0.1456 | 32.5714 | 65.9533 | 1 | 686 | 57 | 118 | 47 | 39.8305 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.8029 | 0.4065 | 32.3699 | 65.8777 | 1 | 245 | 56 | 117 | 46 | 39.3162 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 380 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 61 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 1.5317 | 0.7843 | 32.5163 | 68.9024 | 12 | 1518 | 199 | 413 | 192 | 46.4891 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 3.4141 | 1.8018 | 32.4590 | 68.7660 | 12 | 654 | 198 | 412 | 191 | 46.3592 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 659 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 86.6667 | 0 | 205 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 1.2251 | 0.6250 | 30.7692 | 75.3555 | 3 | 477 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 3.5346 | 1.8750 | 30.7692 | 75.2381 | 3 | 157 | 16 | 36 | 11 | 30.5556 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 279 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 100.0000 | 0 | 41 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 38.3333 | 68.9119 | 0 | 47 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 28.0220 | 59.5556 | 0 | 388 | 51 | 131 | 41 | 31.2977 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 27.3743 | 59.8655 | 0 | 168 | 49 | 130 | 40 | 30.7692 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 175 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 25.0000 | 0 | 45 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 86.6667 | 0 | 26 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 86.2069 | 0 | 3 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 23 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||