PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
47201-47250 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.2908 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 99.2063 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 52.6316 | 96.6841 | 0 | 0 | 10 | 9 | 1 | 11.1111 | |
| gduggal-snapvard | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 50.0000 | 96.4637 | 0 | 0 | 9 | 9 | 1 | 11.1111 | |
| gduggal-snapvard | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 100.0000 | 98.4375 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 30.7692 | 97.7113 | 0 | 0 | 4 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 25.0000 | 97.6285 | 0 | 0 | 3 | 9 | 3 | 33.3333 | |
| gduggal-snapvard | INDEL | C6_15 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3871 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | * | * | 10.7850 | 6.2058 | 41.1492 | 71.3717 | 421 | 6363 | 444 | 635 | 373 | 58.7402 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | het | 17.6734 | 11.3960 | 39.3474 | 71.0797 | 360 | 2799 | 410 | 632 | 372 | 58.8608 | |
| gduggal-snapvard | INDEL | D16_PLUS | * | hetalt | 0.0000 | 1.3451 | 0.0000 | 0.0000 | 26 | 1907 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | * | homalt | 4.0460 | 2.0686 | 91.8919 | 77.7108 | 35 | 1657 | 34 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | * | 9.5470 | 5.2952 | 48.4536 | 72.9428 | 87 | 1556 | 94 | 100 | 53 | 53.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | het | 12.2286 | 7.0461 | 46.2366 | 72.6872 | 78 | 1029 | 86 | 100 | 53 | 53.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.8097 | 0.0000 | 0.0000 | 2 | 245 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | homalt | 4.7297 | 2.4221 | 100.0000 | 77.7778 | 7 | 282 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | * | 3.4436 | 1.7941 | 42.7184 | 52.9680 | 42 | 2299 | 44 | 59 | 35 | 59.3220 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | het | 7.2324 | 3.9506 | 42.7184 | 52.9680 | 16 | 389 | 44 | 59 | 35 | 59.3220 | |
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | hetalt | 0.0000 | 1.3485 | 0.0000 | 0.0000 | 26 | 1902 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 6 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | * | 14.2857 | 8.3333 | 50.0000 | 77.7778 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | het | 20.0000 | 12.5000 | 50.0000 | 77.7778 | 1 | 7 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 3.5385 | 1.9267 | 21.6495 | 84.1374 | 41 | 2087 | 42 | 152 | 95 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 7.2121 | 4.3609 | 20.8333 | 84.0266 | 29 | 636 | 40 | 152 | 95 | 62.5000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 1.0256 | 0.0000 | 0.0000 | 10 | 965 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.8163 | 0.4098 | 100.0000 | 90.4762 | 2 | 486 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||