PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46901-46950 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | het | 79.0507 | 91.3043 | 69.6970 | 89.1089 | 42 | 4 | 69 | 30 | 19 | 63.3333 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 0.0000 | 62.5000 | 0.0000 | 0.0000 | 5 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 62.0102 | 46.4286 | 93.3333 | 84.5361 | 13 | 15 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | * | 72.3984 | 71.7647 | 73.0435 | 88.8023 | 61 | 24 | 84 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | het | 79.3149 | 91.4894 | 70.0000 | 89.2473 | 43 | 4 | 70 | 30 | 19 | 63.3333 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | homalt | 60.5657 | 44.8276 | 93.3333 | 84.5361 | 13 | 16 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | * | 74.0741 | 66.6667 | 83.3333 | 98.0831 | 4 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.1884 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 97.2973 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | * | 56.9106 | 55.5556 | 58.3333 | 95.4631 | 10 | 8 | 14 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | het | 57.4627 | 63.6364 | 52.3810 | 95.5975 | 7 | 4 | 11 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | homalt | 75.0000 | 60.0000 | 100.0000 | 94.2308 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | * | 57.8534 | 59.0909 | 56.6667 | 94.8980 | 13 | 9 | 17 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | het | 60.0858 | 71.4286 | 51.8519 | 94.9343 | 10 | 4 | 14 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.5455 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | het | 61.2245 | 71.4286 | 53.5714 | 94.9183 | 10 | 4 | 15 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.5455 | 3 | 3 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_siren | * | 67.5902 | 64.0472 | 71.5481 | 80.9182 | 326 | 183 | 342 | 136 | 91 | 66.9118 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | het | 75.8046 | 83.5714 | 69.3587 | 81.7036 | 234 | 46 | 292 | 129 | 84 | 65.1163 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 36.3636 | 0.0000 | 0.0000 | 36 | 63 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_siren | homalt | 57.7796 | 43.0769 | 87.7193 | 72.0588 | 56 | 74 | 50 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | * | 67.8956 | 65.9686 | 69.9387 | 92.8194 | 126 | 65 | 114 | 49 | 38 | 77.5510 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | het | 71.7253 | 78.2609 | 66.1972 | 93.2445 | 72 | 20 | 94 | 48 | 37 | 77.0833 | |
| gduggal-snapvard | INDEL | D6_15 | segdup | hetalt | 0.0000 | 55.1020 | 0.0000 | 0.0000 | 27 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | segdup | homalt | 68.9215 | 54.0000 | 95.2381 | 87.5000 | 27 | 23 | 20 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | het | 54.5455 | 60.0000 | 50.0000 | 62.5000 | 6 | 4 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | homalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 1 | 5 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | * | * | 2.3476 | 1.2075 | 42.0851 | 50.8200 | 77 | 6300 | 1098 | 1511 | 872 | 57.7101 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | het | 3.9257 | 2.0603 | 41.4818 | 51.0283 | 56 | 2662 | 1047 | 1477 | 850 | 57.5491 | |
| gduggal-snapvard | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.4290 | 0.0000 | 0.0000 | 9 | 2089 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | * | homalt | 1.5180 | 0.7687 | 60.0000 | 43.7086 | 12 | 1549 | 51 | 34 | 22 | 64.7059 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | * | 1.7978 | 0.9167 | 46.1538 | 59.1623 | 12 | 1297 | 216 | 252 | 147 | 58.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | het | 3.1923 | 1.6541 | 45.5157 | 59.5648 | 11 | 654 | 203 | 243 | 141 | 58.0247 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 335 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | HG002complexvar | homalt | 0.6437 | 0.3236 | 59.0909 | 48.8372 | 1 | 308 | 13 | 9 | 6 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | * | 0.9920 | 0.5133 | 14.7343 | 45.8824 | 11 | 2132 | 61 | 353 | 189 | 53.5411 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | het | 6.6071 | 4.2553 | 14.7700 | 45.8005 | 2 | 45 | 61 | 352 | 188 | 53.4091 | |
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.4300 | 0.0000 | 0.0000 | 9 | 2084 | 0 | 0 | 0 | ||