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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 933 934 935 936 937 938 939 940 941 ... 1720 1721 » 46801-46850 / 86044 show all
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	1	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	55.8292	50.1922	62.8926	42.4297	6919	6866	6849	4041	3720	92.0564
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	69.1351	77.4877	62.4080	42.2541	2998	871	6702	4037	3716	92.0486
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	52.0388	0.0000	0.0000	3701	3411	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	14.5215	7.8459	97.3510	52.6646	220	2584	147	4	4	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	60.5607	55.5947	66.5009	43.6531	6161	4921	6019	3032	2878	94.9208
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	72.8639	81.3378	65.9890	43.5053	2663	611	5875	3028	2874	94.9141
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	60.5737	0.0000	0.0000	3294	2144	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	15.8160	8.6076	97.2973	51.3158	204	2166	144	4	4	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	56.1720	50.7947	62.8225	45.1920	7510	7275	7523	4452	4009	90.0494
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	69.4728	78.5200	62.2951	44.9448	3491	955	7334	4439	3996	90.0203
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	51.8121	0.0000	0.0000	3717	3457	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	17.3176	9.5419	93.5644	56.5591	302	2863	189	13	13	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	55.1228	49.5784	62.0635	51.0444	8761	8910	8975	5486	4728	86.1830
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	67.5308	74.8546	61.5124	50.8317	4376	1470	8728	5461	4703	86.1198
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	49.7829	0.0000	0.0000	4012	4047	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	17.8608	9.9044	90.8088	60.0587	373	3393	247	25	25	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	59.9212	54.8636	66.0058	31.4666	5189	4269	5194	2675	2487	92.9720
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	71.5901	79.0706	65.4026	31.3787	2161	572	5036	2664	2476	92.9429
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	59.5348	0.0000	0.0000	2841	1931	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	17.3710	9.5750	93.4911	35.2490	187	1766	158	11	11	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	26.7835	20.7451	37.7805	22.4371	245	936	303	499	460	92.1844
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	45.0912	56.0811	37.7029	22.3084	83	65	302	499	460	92.1844
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	0.0000	18.2339	0.0000	0.0000	159	713	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	homalt	3.6585	1.8634	100.0000	66.6667	3	158	1	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	69.3384	66.5414	72.3810	85.5372	177	89	152	58	39	67.2414
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	het	76.3488	85.1613	69.1892	86.1111	132	23	128	57	38	66.6667
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	45.9459	0.0000	0.0000	17	20	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	54.2811	37.8378	96.0000	79.1667	28	46	24	1	1	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	48.9054	43.8596	55.2632	99.4833	25	32	21	17	14	82.3529
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	het	51.7879	47.6190	56.7568	99.4738	20	22	21	16	13	81.2500
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	0.0000	33.3333	0.0000	0.0000	3	6	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt	0.0000	33.3333	0.0000	99.6894	2	4	0	1	1	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	55.4366	50.8272	60.9654	44.0200	1874	1813	2046	1310	988	75.4198
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	66.3215	73.5347	60.3969	44.0745	1217	438	1978	1297	975	75.1735
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	0.0000	47.3773	0.0000	0.0000	560	622	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	20.0923	11.4118	83.9506	41.7266	97	753	68	13	13	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	26.8403	19.6198	42.4704	32.3024	258	1057	251	340	290	85.2941
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	35.5751	30.6061	42.4704	32.1470	101	229	251	340	290	85.2941
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	19.1677	0.0000	0.0000	152	641	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt		2.6042		100.0000	5	187	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0

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