PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46401-46450 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | homalt | 96.5678 | 93.8198 | 99.4817 | 88.0057 | 2520 | 166 | 2495 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | * | 86.3822 | 95.4176 | 78.9099 | 91.6016 | 7621 | 366 | 7543 | 2016 | 102 | 5.0595 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | het | 82.0702 | 96.3526 | 71.4754 | 92.4111 | 5072 | 192 | 5019 | 2003 | 93 | 4.6430 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | homalt | 96.5507 | 93.7822 | 99.4876 | 88.0830 | 2549 | 169 | 2524 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | map_siren | * | 96.2272 | 96.4179 | 96.0373 | 65.1379 | 140990 | 5238 | 139038 | 5737 | 591 | 10.3016 | |
| gduggal-snapvard | SNP | * | map_siren | het | 95.1967 | 96.5469 | 93.8838 | 69.6200 | 87849 | 3142 | 86743 | 5651 | 524 | 9.2727 | |
| gduggal-snapvard | SNP | * | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | map_siren | homalt | 98.0593 | 96.3449 | 99.8358 | 52.8740 | 53140 | 2016 | 52295 | 86 | 67 | 77.9070 | |
| gduggal-snapvard | SNP | * | segdup | * | 98.2794 | 97.3955 | 99.1795 | 93.1728 | 27336 | 731 | 27076 | 224 | 72 | 32.1429 | |
| gduggal-snapvard | SNP | * | segdup | het | 98.1316 | 97.2975 | 98.9803 | 94.4886 | 16849 | 468 | 16695 | 172 | 22 | 12.7907 | |
| gduggal-snapvard | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | segdup | homalt | 98.5503 | 97.6171 | 99.5016 | 88.8814 | 10487 | 256 | 10381 | 52 | 50 | 96.1538 | |
| gduggal-snapvard | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | tech_badpromoters | * | 88.3476 | 84.7134 | 92.3077 | 52.4917 | 133 | 24 | 132 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | het | 86.4516 | 87.0130 | 85.8974 | 57.3770 | 67 | 10 | 67 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | tech_badpromoters | homalt | 90.4110 | 82.5000 | 100.0000 | 44.9153 | 66 | 14 | 65 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | * | * | 99.1158 | 98.9272 | 99.3052 | 22.3384 | 2063143 | 22374 | 2054412 | 14373 | 2372 | 16.5032 | |
| gduggal-snapvard | SNP | ti | * | het | 98.9307 | 98.9471 | 98.9142 | 25.7701 | 1268399 | 13497 | 1263991 | 13875 | 2046 | 14.7459 | |
| gduggal-snapvard | SNP | ti | * | hetalt | 0.0000 | 1.0309 | 0.0000 | 0.0000 | 6 | 576 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | * | homalt | 99.4493 | 98.9663 | 99.9370 | 16.0694 | 794738 | 8301 | 790421 | 498 | 326 | 65.4618 | |
| gduggal-snapvard | SNP | ti | HG002complexvar | * | 97.8937 | 96.7473 | 99.0676 | 19.7850 | 491898 | 16538 | 483039 | 4546 | 1783 | 39.2213 | |
| gduggal-snapvard | SNP | ti | HG002complexvar | het | 97.7415 | 96.8929 | 98.6052 | 20.9330 | 304985 | 9780 | 300448 | 4250 | 1602 | 37.6941 | |
| gduggal-snapvard | SNP | ti | HG002complexvar | hetalt | 0.0000 | 2.8986 | 0.0000 | 0.0000 | 6 | 201 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | HG002complexvar | homalt | 98.1979 | 96.6107 | 99.8382 | 17.7966 | 186907 | 6557 | 182591 | 296 | 181 | 61.1486 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | * | 79.9822 | 79.9565 | 80.0079 | 49.1293 | 13974 | 3503 | 14163 | 3539 | 1489 | 42.0740 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | het | 77.4625 | 83.1755 | 72.4839 | 53.3720 | 7905 | 1599 | 9096 | 3453 | 1426 | 41.2974 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | hetalt | 0.0000 | 1.0363 | 0.0000 | 0.0000 | 6 | 573 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | HG002compoundhet | homalt | 89.4254 | 81.9989 | 98.3311 | 34.6481 | 6063 | 1331 | 5067 | 86 | 63 | 73.2558 | |
| gduggal-snapvard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9986 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9896 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | func_cds | * | 99.4321 | 99.1151 | 99.7511 | 27.3375 | 13665 | 122 | 13628 | 34 | 14 | 41.1765 | |
| gduggal-snapvard | SNP | ti | func_cds | het | 99.3512 | 99.0945 | 99.6092 | 31.0131 | 8427 | 77 | 8411 | 33 | 13 | 39.3939 | |
| gduggal-snapvard | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | func_cds | homalt | 99.6385 | 99.2986 | 99.9808 | 20.4816 | 5238 | 37 | 5217 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.5113 | 95.2894 | 72.7551 | 82.9109 | 3095 | 153 | 3095 | 1159 | 30 | 2.5884 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.9223 | 95.2075 | 63.1339 | 85.1688 | 1927 | 97 | 1942 | 1134 | 22 | 1.9400 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6357 | 95.4248 | 97.8778 | 71.6350 | 1168 | 56 | 1153 | 25 | 8 | 32.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.8181 | 97.0493 | 87.1220 | 66.7143 | 27134 | 825 | 26966 | 3986 | 179 | 4.4907 | |