PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46101-46150 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | het | 92.6451 | 97.4464 | 88.2947 | 79.7695 | 15531 | 407 | 15471 | 2051 | 143 | 6.9722 | |
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l100_m2_e1 | homalt | 98.2305 | 96.6996 | 99.8105 | 63.7425 | 8995 | 307 | 8956 | 17 | 11 | 64.7059 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | * | 89.3998 | 96.0489 | 83.6117 | 82.4411 | 6369 | 262 | 6357 | 1246 | 62 | 4.9759 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | het | 85.9375 | 96.6599 | 77.3564 | 84.6449 | 4254 | 147 | 4243 | 1242 | 59 | 4.7504 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | homalt | 97.4654 | 95.2274 | 99.8111 | 72.0544 | 2115 | 106 | 2114 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | * | 93.0563 | 96.9343 | 89.4767 | 78.3907 | 15525 | 491 | 15475 | 1820 | 120 | 6.5934 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | het | 90.5242 | 97.5015 | 84.4788 | 81.5577 | 9873 | 253 | 9846 | 1809 | 112 | 6.1913 | |
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m1_e0 | homalt | 98.0991 | 96.4505 | 99.8050 | 66.5043 | 5652 | 208 | 5629 | 11 | 8 | 72.7273 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | * | 93.1565 | 96.9192 | 89.6752 | 79.7699 | 15981 | 508 | 15929 | 1834 | 123 | 6.7067 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | het | 90.6936 | 97.4909 | 84.7824 | 82.7072 | 10180 | 262 | 10151 | 1822 | 114 | 6.2569 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | homalt | 98.0723 | 96.4102 | 99.7927 | 68.8173 | 5801 | 216 | 5778 | 12 | 9 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | * | 93.1692 | 96.8962 | 89.7183 | 79.8287 | 16140 | 517 | 16082 | 1843 | 125 | 6.7824 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | het | 90.7385 | 97.4983 | 84.8553 | 82.7554 | 10289 | 264 | 10259 | 1831 | 116 | 6.3353 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | homalt | 98.0309 | 96.3286 | 99.7943 | 68.8883 | 5851 | 223 | 5823 | 12 | 9 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | * | 87.3397 | 95.8793 | 80.1968 | 85.6633 | 4002 | 172 | 3993 | 986 | 44 | 4.4625 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | het | 83.5823 | 96.6936 | 73.6022 | 87.1311 | 2749 | 94 | 2738 | 982 | 41 | 4.1752 | |
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m0_e0 | homalt | 96.9441 | 94.3524 | 99.6823 | 78.3751 | 1253 | 75 | 1255 | 4 | 3 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | * | 91.4337 | 96.5909 | 86.7993 | 81.5080 | 10540 | 372 | 10514 | 1599 | 100 | 6.2539 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | het | 88.3469 | 97.2934 | 80.9072 | 84.0922 | 6758 | 188 | 6742 | 1591 | 94 | 5.9082 | |
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m1_e0 | homalt | 97.7764 | 95.8439 | 99.7884 | 71.1912 | 3782 | 164 | 3772 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | * | 91.6223 | 96.6094 | 87.1248 | 82.6892 | 10970 | 385 | 10942 | 1617 | 102 | 6.3080 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | het | 88.6343 | 97.2835 | 81.3975 | 85.0700 | 7055 | 197 | 7036 | 1608 | 95 | 5.9080 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | homalt | 97.7892 | 95.8854 | 99.7701 | 73.2819 | 3915 | 168 | 3906 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | * | 91.6730 | 96.6093 | 87.2166 | 82.7232 | 11112 | 390 | 11080 | 1624 | 104 | 6.4039 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | het | 88.7208 | 97.3054 | 81.5281 | 85.1064 | 7150 | 198 | 7128 | 1615 | 97 | 6.0062 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | tv | map_l150_m2_e1 | homalt | 97.7665 | 95.8394 | 99.7728 | 73.2888 | 3962 | 172 | 3952 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 59.4937 | 0.0000 | 0.0000 | 141 | 96 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 21.2121 | 11.8644 | 100.0000 | 33.3333 | 7 | 52 | 12 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 7.6923 | 0.0000 | 87.5000 | 1 | 12 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0.0000 | 87.5000 | 1 | 0 | 0 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | * | 57.3585 | 57.5758 | 57.1429 | 81.9063 | 19 | 14 | 64 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | het | 68.5015 | 94.1176 | 53.8462 | 81.9757 | 16 | 1 | 56 | 48 | 36 | 75.0000 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m0_e0 | homalt | 15.3846 | 8.3333 | 100.0000 | 80.9524 | 1 | 11 | 8 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | * | 60.7947 | 60.5263 | 61.0656 | 78.8378 | 69 | 45 | 149 | 95 | 77 | 81.0526 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | het | 70.0428 | 89.8305 | 57.3991 | 79.1978 | 53 | 6 | 128 | 95 | 77 | 81.0526 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 42.8571 | 27.2727 | 100.0000 | 74.0741 | 9 | 24 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | * | 60.8455 | 60.3448 | 61.3546 | 79.4431 | 70 | 46 | 154 | 97 | 79 | 81.4433 | |