PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45601-45650 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 57.8592 | 55.4482 | 60.4894 | 43.6279 | 17739 | 14253 | 30010 | 19602 | 17898 | 91.3070 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 69.0093 | 82.0142 | 59.5643 | 43.2407 | 10269 | 2252 | 28735 | 19507 | 17809 | 91.2954 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 56.7762 | 0.0000 | 0.0000 | 6305 | 4800 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 24.2259 | 13.9254 | 93.0657 | 54.5455 | 1165 | 7201 | 1275 | 95 | 89 | 93.6842 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 55.4931 | 52.6341 | 58.6805 | 53.0447 | 22809 | 20526 | 37552 | 26442 | 22338 | 84.4792 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 65.9821 | 77.5633 | 57.4100 | 52.3175 | 13821 | 3998 | 35430 | 26284 | 22200 | 84.4620 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 49.6365 | 0.0000 | 0.0000 | 6965 | 7067 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 29.6245 | 17.6158 | 93.0702 | 66.7638 | 2023 | 9461 | 2122 | 158 | 138 | 87.3418 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 57.9193 | 56.2153 | 59.7299 | 62.4801 | 36735 | 28612 | 56563 | 38135 | 29523 | 77.4171 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 66.4735 | 78.6403 | 57.5670 | 62.2369 | 23968 | 6510 | 51344 | 37846 | 29268 | 77.3345 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 46.7074 | 0.0000 | 0.0000 | 7802 | 8902 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 42.4269 | 27.3328 | 94.7531 | 66.0231 | 4965 | 13200 | 5219 | 289 | 255 | 88.2353 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 65.2231 | 63.7325 | 66.7851 | 42.6875 | 23321 | 13271 | 40773 | 20278 | 18291 | 90.2012 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 73.0691 | 85.1079 | 64.0141 | 42.9883 | 13413 | 2347 | 35693 | 20065 | 18085 | 90.1321 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 58.7303 | 0.0000 | 0.0000 | 6152 | 4323 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 52.6401 | 36.2653 | 95.9758 | 39.3144 | 3756 | 6601 | 5080 | 213 | 206 | 96.7136 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 23.1444 | 17.6107 | 33.7493 | 43.2911 | 370 | 1731 | 649 | 1274 | 1040 | 81.6327 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.5477 | 35.3061 | 33.8212 | 42.2578 | 173 | 317 | 647 | 1266 | 1039 | 82.0695 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 15.4153 | 0.0000 | 0.0000 | 193 | 1059 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 2.1108 | 1.1142 | 20.0000 | 87.1795 | 4 | 355 | 2 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.4077 | 96.8613 | 95.9584 | 55.0491 | 27373 | 887 | 54846 | 2310 | 1901 | 82.2944 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.2180 | 98.6853 | 93.8711 | 58.0279 | 16213 | 216 | 34875 | 2277 | 1868 | 82.0378 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 78.1308 | 0.0000 | 0.0000 | 418 | 117 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.4077 | 95.0956 | 99.8350 | 48.2245 | 10742 | 554 | 19971 | 33 | 33 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 32.8464 | 22.5806 | 60.2273 | 99.9609 | 28 | 96 | 53 | 35 | 24 | 68.5714 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.7887 | 26.4368 | 60.4651 | 99.9570 | 23 | 64 | 52 | 34 | 23 | 67.6471 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 18.7500 | 0.0000 | 0.0000 | 3 | 13 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 16.0000 | 9.5238 | 50.0000 | 99.9920 | 2 | 19 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 65.0019 | 66.3696 | 63.6895 | 52.5107 | 13181 | 6679 | 19510 | 11123 | 7883 | 70.8712 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 70.9040 | 85.7657 | 60.4321 | 53.0525 | 9526 | 1581 | 16837 | 11024 | 7799 | 70.7456 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 45.6919 | 0.0000 | 0.0000 | 1225 | 1456 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 56.5642 | 40.0198 | 96.4286 | 46.2791 | 2430 | 3642 | 2673 | 99 | 84 | 84.8485 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.1855 | 22.9755 | 36.4514 | 63.8922 | 610 | 2045 | 982 | 1712 | 1115 | 65.1285 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 37.9373 | 39.6694 | 36.3501 | 63.2242 | 384 | 584 | 976 | 1709 | 1112 | 65.0673 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 18.1590 | 0.0000 | 0.0000 | 217 | 978 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 3.5608 | 1.8293 | 66.6667 | 94.3750 | 9 | 483 | 6 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 73.1367 | 73.8749 | 72.4131 | 44.0488 | 4974 | 1759 | 7145 | 2722 | 2236 | 82.1455 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.7482 | 91.5528 | 69.0859 | 44.8186 | 3349 | 309 | 5978 | 2675 | 2192 | 81.9439 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 65.3304 | 0.0000 | 0.0000 | 603 | 320 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 63.5738 | 47.4907 | 96.1285 | 37.8710 | 1022 | 1130 | 1167 | 47 | 44 | 93.6170 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.4471 | 27.4775 | 46.1538 | 56.0976 | 61 | 161 | 108 | 126 | 89 | 70.6349 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 47.2648 | 48.0000 | 46.5517 | 55.5556 | 24 | 26 | 108 | 124 | 89 | 71.7742 | |