PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45501-45550 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.2507 | 80.5274 | 97.6127 | 83.3538 | 4367 | 1056 | 4375 | 107 | 45 | 42.0561 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 79.1231 | 74.0733 | 84.9119 | 84.9242 | 3597 | 1259 | 3613 | 642 | 94 | 14.6417 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 75.8773 | 72.5712 | 79.4989 | 87.1649 | 2241 | 847 | 2253 | 581 | 59 | 10.1549 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 85.2074 | 76.7402 | 95.7746 | 76.7746 | 1356 | 411 | 1360 | 60 | 34 | 56.6667 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 30.0000 | 35.2941 | 26.0870 | 98.9890 | 6 | 11 | 6 | 17 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 66.6667 | 85.7143 | 98.7973 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 91.4324 | 84.8960 | 99.0592 | 66.8074 | 9263 | 1648 | 9266 | 88 | 18 | 20.4545 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.3269 | 85.0549 | 98.5976 | 67.7194 | 5970 | 1049 | 5976 | 85 | 18 | 21.1765 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.1905 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.6132 | 84.5897 | 99.9088 | 64.9616 | 3288 | 599 | 3285 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 81.2213 | 71.4171 | 94.1457 | 64.2321 | 5322 | 2130 | 5339 | 332 | 30 | 9.0361 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.5706 | 70.3775 | 91.5264 | 68.8371 | 3300 | 1389 | 3316 | 307 | 18 | 5.8632 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 84.0660 | 73.1690 | 98.7769 | 51.5065 | 2018 | 740 | 2019 | 25 | 12 | 48.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 34.7826 | 47.6190 | 27.3973 | 95.0441 | 20 | 22 | 20 | 53 | 3 | 5.6604 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1905 | 52.7778 | 27.5362 | 94.7767 | 19 | 17 | 19 | 50 | 3 | 6.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.0000 | 16.6667 | 25.0000 | 97.2973 | 1 | 5 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 80.9810 | 69.4783 | 97.0481 | 57.6686 | 2397 | 1053 | 2400 | 73 | 9 | 12.3288 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0119 | 68.8026 | 95.5844 | 61.7961 | 1471 | 667 | 1472 | 68 | 5 | 7.3529 | |
| gduggal-snapvard | INDEL | * | * | * | 83.0264 | 83.4429 | 82.6139 | 57.1178 | 287491 | 57045 | 327755 | 68976 | 51941 | 75.3030 | |
| gduggal-snapvard | INDEL | * | * | het | 84.4835 | 93.2561 | 77.2195 | 60.6809 | 181038 | 13092 | 228131 | 67301 | 50370 | 74.8429 | |
| gduggal-snapvard | INDEL | * | * | hetalt | 0.0000 | 37.0438 | 0.0000 | 0.0000 | 9348 | 15887 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | * | homalt | 86.7363 | 77.5779 | 98.3465 | 41.7135 | 97105 | 28066 | 99624 | 1675 | 1571 | 93.7910 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | * | 84.5803 | 84.0929 | 85.0735 | 55.5785 | 64696 | 12238 | 73113 | 12828 | 8678 | 67.6489 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | het | 85.1014 | 90.1233 | 80.6095 | 59.0444 | 41646 | 4564 | 51233 | 12324 | 8222 | 66.7154 | |
| gduggal-snapvard | INDEL | * | HG002complexvar | hetalt | 0.0000 | 38.0476 | 0.0000 | 0.0000 | 1407 | 2291 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | HG002complexvar | homalt | 88.0378 | 80.0821 | 97.7484 | 41.5287 | 21643 | 5383 | 21880 | 504 | 456 | 90.4762 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | * | 47.5012 | 42.0784 | 54.5285 | 56.5286 | 12605 | 17351 | 24630 | 20539 | 16069 | 78.2365 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | het | 60.5436 | 68.6950 | 54.1215 | 56.4812 | 2811 | 1281 | 24103 | 20432 | 15973 | 78.1764 | |
| gduggal-snapvard | INDEL | * | HG002compoundhet | hetalt | 0.0000 | 37.0482 | 0.0000 | 0.0000 | 9328 | 15850 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | HG002compoundhet | homalt | 74.7625 | 67.9300 | 83.1230 | 59.6178 | 466 | 220 | 527 | 107 | 96 | 89.7196 | |
| gduggal-snapvard | INDEL | * | decoy | * | 40.5405 | 30.0000 | 62.5000 | 99.9717 | 3 | 7 | 5 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | decoy | het | 42.1053 | 33.3333 | 57.1429 | 99.9727 | 2 | 4 | 4 | 3 | 0 | 0.0000 | |