PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45401-45450 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 95.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | map_l250_m1_e0 | homalt | 88.1167 | 78.9048 | 99.7638 | 88.2047 | 1268 | 339 | 1267 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | * | 88.7392 | 83.8658 | 94.2139 | 93.6830 | 4200 | 808 | 4201 | 258 | 136 | 52.7132 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | het | 88.7434 | 85.9865 | 91.6830 | 94.7245 | 2798 | 456 | 2800 | 254 | 132 | 51.9685 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e0 | homalt | 88.7618 | 79.9314 | 99.7857 | 88.9135 | 1398 | 351 | 1397 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | * | 88.7551 | 83.8849 | 94.2257 | 93.7237 | 4258 | 818 | 4259 | 261 | 138 | 52.8736 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | het | 88.7384 | 85.9654 | 91.6963 | 94.7638 | 2836 | 463 | 2838 | 257 | 134 | 52.1401 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | hetalt | 80.0000 | 80.0000 | 80.0000 | 92.7536 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l250_m2_e1 | homalt | 88.8192 | 80.0226 | 99.7887 | 88.9408 | 1418 | 354 | 1417 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_siren | * | 97.1306 | 96.0829 | 98.2013 | 65.7243 | 96424 | 3931 | 96473 | 1767 | 855 | 48.3871 | |
| gduggal-snapplat | SNP | ti | map_siren | het | 96.8090 | 96.4253 | 97.1959 | 70.5211 | 60152 | 2230 | 60242 | 1738 | 830 | 47.7560 | |
| gduggal-snapplat | SNP | ti | map_siren | hetalt | 89.5492 | 91.2281 | 87.9310 | 76.7068 | 52 | 5 | 51 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_siren | homalt | 97.6833 | 95.5270 | 99.9392 | 52.4384 | 36220 | 1696 | 36180 | 22 | 18 | 81.8182 | |
| gduggal-snapplat | SNP | ti | segdup | * | 99.0792 | 98.8483 | 99.3111 | 92.8755 | 19312 | 225 | 19317 | 134 | 17 | 12.6866 | |
| gduggal-snapplat | SNP | ti | segdup | het | 98.8353 | 98.7116 | 98.9593 | 94.3052 | 11875 | 155 | 11886 | 125 | 11 | 8.8000 | |
| gduggal-snapplat | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0099 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | segdup | homalt | 99.4715 | 99.0673 | 99.8790 | 87.9842 | 7435 | 70 | 7429 | 9 | 6 | 66.6667 | |
| gduggal-snapplat | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 61.3953 | 79 | 6 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | het | 93.3333 | 95.4545 | 91.3043 | 68.9189 | 42 | 2 | 42 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | * | * | 98.6169 | 98.1754 | 99.0623 | 31.7051 | 952005 | 17693 | 952368 | 9015 | 1026 | 11.3810 | |
| gduggal-snapplat | SNP | tv | * | het | 98.3145 | 98.0664 | 98.5638 | 36.3598 | 580263 | 11441 | 580658 | 8461 | 866 | 10.2352 | |
| gduggal-snapplat | SNP | tv | * | hetalt | 96.2665 | 94.8335 | 97.7435 | 52.4025 | 826 | 45 | 823 | 19 | 18 | 94.7368 | |
| gduggal-snapplat | SNP | tv | * | homalt | 99.0993 | 98.3541 | 99.8560 | 22.6563 | 370916 | 6207 | 370887 | 535 | 142 | 26.5421 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | * | 97.5342 | 96.7281 | 98.3538 | 26.8142 | 238101 | 8054 | 238450 | 3991 | 673 | 16.8629 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | het | 96.9038 | 96.2928 | 97.5225 | 28.0304 | 145146 | 5588 | 145527 | 3697 | 526 | 14.2278 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | homalt | 98.5607 | 97.4503 | 99.6966 | 24.7080 | 92686 | 2425 | 92657 | 282 | 135 | 47.8723 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | * | 81.2573 | 87.2016 | 76.0717 | 63.0432 | 7781 | 1142 | 7808 | 2456 | 275 | 11.1971 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | het | 71.6435 | 82.9018 | 63.0774 | 69.0248 | 3874 | 799 | 3919 | 2294 | 156 | 6.8004 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | homalt | 93.1015 | 91.1747 | 95.1114 | 51.4204 | 3089 | 299 | 3074 | 158 | 115 | 72.7848 | |
| gduggal-snapplat | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | func_cds | * | 99.2890 | 99.0391 | 99.5401 | 39.3276 | 4329 | 42 | 4329 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | het | 99.1144 | 98.9838 | 99.2453 | 45.4845 | 2630 | 27 | 2630 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 47.0588 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | func_cds | homalt | 99.5875 | 99.1784 | 100.0000 | 26.2009 | 1690 | 14 | 1690 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 78.3315 | 84.6966 | 72.8563 | 89.5793 | 1284 | 232 | 1283 | 478 | 11 | 2.3013 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.2480 | 83.2661 | 63.8051 | 90.8950 | 826 | 166 | 825 | 468 | 9 | 1.9231 | |
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.3387 | 87.4046 | 97.8632 | 82.4456 | 458 | 66 | 458 | 10 | 2 | 20.0000 | |