PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45151-45200 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 30.1911 | 18.8995 | 75.0000 | 65.9016 | 79 | 339 | 78 | 26 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 10.4575 | 6.5574 | 25.8065 | 80.9816 | 8 | 114 | 8 | 23 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 44.5902 | 28.6920 | 100.0000 | 33.6634 | 68 | 169 | 67 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 9.2308 | 5.0847 | 50.0000 | 85.3659 | 3 | 56 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 14.2857 | 7.6923 | 100.0000 | 80.0000 | 1 | 12 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 15.3846 | 8.3333 | 100.0000 | 50.0000 | 1 | 11 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | * | 13.9535 | 9.0909 | 30.0000 | 94.4751 | 3 | 30 | 3 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 17 | 0 | 6 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m0_e0 | homalt | 37.5000 | 25.0000 | 75.0000 | 89.7436 | 3 | 9 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | * | 17.3913 | 10.5263 | 50.0000 | 94.3445 | 12 | 102 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | het | 18.3007 | 11.8644 | 40.0000 | 93.4211 | 7 | 52 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 22 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.2692 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | * | 17.1429 | 10.3448 | 50.0000 | 94.9192 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | het | 17.8344 | 11.4754 | 40.0000 | 94.1406 | 7 | 54 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 22 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.7500 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | * | 17.1429 | 10.3448 | 50.0000 | 95.0339 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | het | 17.8344 | 11.4754 | 40.0000 | 94.2748 | 7 | 54 | 6 | 9 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 22 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.9130 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 97.7444 | 0 | 15 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 97.5904 | 0 | 9 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.1806 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | het | 10.2564 | 6.6667 | 22.2222 | 94.8864 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | * | 9.3750 | 5.6604 | 27.2727 | 96.5839 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | het | 10.2564 | 6.6667 | 22.2222 | 95.4315 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.4026 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | * | 9.3750 | 5.6604 | 27.2727 | 96.6967 | 3 | 50 | 3 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | het | 10.2564 | 6.6667 | 22.2222 | 95.5882 | 2 | 28 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.5309 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 99.0291 | 0 | 8 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.3607 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | * | 13.3333 | 8.0000 | 40.0000 | 97.7974 | 2 | 23 | 2 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | het | 10.5263 | 6.6667 | 25.0000 | 96.8992 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||