PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44451-44500 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | tv | tech_badpromoters | homalt | 90.1408 | 82.0513 | 100.0000 | 62.3529 | 32 | 7 | 32 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.7313 | 74.9840 | 78.5619 | 87.2292 | 4676 | 1560 | 4720 | 1288 | 113 | 8.7733 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.0618 | 78.8133 | 94.7787 | 77.2212 | 2723 | 732 | 2741 | 151 | 73 | 48.3444 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 40.4040 | 47.6190 | 35.0877 | 98.8711 | 20 | 22 | 20 | 37 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 25.0000 | 33.3333 | 20.0000 | 98.9024 | 9 | 18 | 9 | 36 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.4815 | 73.3333 | 91.6667 | 98.7315 | 11 | 4 | 11 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4411 | 88.2459 | 99.2862 | 62.0370 | 15158 | 2019 | 15162 | 109 | 22 | 20.1835 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.2764 | 88.2353 | 98.9284 | 63.4212 | 9780 | 1304 | 9786 | 106 | 22 | 20.7547 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.1905 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.7369 | 88.2556 | 99.9442 | 59.1703 | 5373 | 715 | 5371 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 86.7685 | 79.7558 | 95.1333 | 68.7830 | 14502 | 3681 | 14524 | 743 | 84 | 11.3055 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 85.4527 | 79.0606 | 92.9693 | 74.0678 | 9039 | 2394 | 9058 | 685 | 58 | 8.4672 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.8889 | 80.0000 | 100.0000 | 71.4286 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.0395 | 80.9340 | 98.9493 | 51.2411 | 5459 | 1286 | 5462 | 58 | 26 | 44.8276 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 27.4760 | 30.0699 | 25.2941 | 98.0122 | 43 | 100 | 43 | 127 | 9 | 7.0866 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.4980 | 31.3725 | 21.4765 | 98.0147 | 32 | 70 | 32 | 117 | 5 | 4.2735 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 35.4839 | 26.8293 | 52.3810 | 97.9866 | 11 | 30 | 11 | 10 | 4 | 40.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9496 | 78.1237 | 98.0235 | 54.2271 | 5746 | 1609 | 5753 | 116 | 13 | 11.2069 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.1010 | 77.3614 | 97.0668 | 59.1479 | 3571 | 1045 | 3574 | 108 | 9 | 8.3333 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.3969 | 79.4375 | 99.6342 | 42.5683 | 2175 | 563 | 2179 | 8 | 4 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 21.0526 | 44.4444 | 13.7931 | 96.4198 | 4 | 5 | 4 | 25 | 1 | 4.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 12.1212 | 28.5714 | 7.6923 | 96.3121 | 2 | 5 | 2 | 24 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.1429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | * | 93.1162 | 90.6854 | 95.6808 | 80.1096 | 29782 | 3059 | 29795 | 1345 | 754 | 56.0595 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | het | 93.0063 | 92.3697 | 93.6518 | 83.5542 | 19587 | 1618 | 19606 | 1329 | 738 | 55.5305 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | homalt | 93.3571 | 87.6248 | 99.8920 | 65.0376 | 10182 | 1438 | 10176 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | * | 95.4122 | 93.9174 | 96.9553 | 75.8528 | 67999 | 4404 | 68019 | 2136 | 1080 | 50.5618 | |