PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
44001-44050 / 86044 show all
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.3775
37.0578
83.7332
64.5819
5479930652351017480
47.1976
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
44.4716
32.8160
68.9674
74.6267
145929871289580148
25.5172
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
52.7132
36.3814
95.6522
52.4661
261045642618119102
85.7143
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
57.4030
44.5498
80.6804
63.6484
141017551328318230
72.3270
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
41.0970
29.3534
68.5039
74.9565
171641301479680172
25.2941
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
51.1480
34.9051
95.6654
53.7872
281352462825128108
84.3750
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
55.0977
41.6888
81.2222
64.9260
157021961462338247
73.0769
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
60.7128
46.4157
87.7382
45.3351
439050684236592317
53.5473
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
52.9926
40.3952
77.0079
55.5166
1104162997829297
33.2192
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
62.7608
46.6890
95.7058
37.3301
22282544225110189
88.1188
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
65.7127
54.1731
83.4992
45.7734
10588951007199131
65.8291
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
24.3587
15.4953
56.9132
61.6995
18399817713497
72.3881
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
20.6825
16.8919
26.6667
71.6981
25123205529
52.7273
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
21.9561
12.5000
90.1639
55.1471
1097631101210
83.3333
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.0186
30.4348
41.2281
58.5455
49112476758
86.5672
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
39.6010
27.0677
73.7500
90.5101
7219459214
19.0476
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
33.1361
22.5806
62.2222
91.9210
3512028171
5.8824
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
34.0426
21.6216
80.0000
86.6667
829822
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
54.9650
39.1892
92.0000
88.1517
29452321
50.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
6.7797
3.5088
100.0000
99.9898
255100
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
9.0909
4.7619
100.0000
99.9785
240100
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
09000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
06000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
36.7443
23.6507
82.3171
53.0758
872281581017464
36.7816
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
31.9191
20.6647
70.0935
57.9568
342131330012830
23.4375
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
38.1468
23.7733
96.4789
45.0677
281901274107
70.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
43.8001
29.2941
86.7647
51.6014
2496012363627
75.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
23.7665
14.5247
65.3430
41.4376
19111241819638
39.5833
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
16.5989
10.9091
34.6939
47.3118
36294346412
18.7500
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
22.9356
12.9887
97.9381
34.8993
1036909522
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
37.9562
27.0833
63.4146
40.5797
52140523024
80.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
46.0973
30.8671
90.9962
43.3225
53411964754719
40.4255
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
43.3030
29.1607
84.0796
50.0000
205498169327
21.8750
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
45.8495
29.7945
99.4253
32.5581
17441017311
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
50.4626
34.9887
90.4762
43.6782
1552881331411
78.5714
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
32.4371
20.4225
78.7879
49.2308
291132674
57.1429
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
11.1111
8.3333
16.6667
72.7273
222152
40.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
25.2252
14.4330
100.0000
37.5000
14831500
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
71.0383
61.9048
83.3333
36.8421
1381022
100.0000
gduggal-snapplatINDELD6_15map_l100_m0_e0*
42.7650
28.1553
88.8889
96.7332
29741620
0.0000
gduggal-snapplatINDELD6_15map_l100_m0_e0het
47.3684
33.3333
81.8182
96.8208
2040920
0.0000