PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43801-43850 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | het | 73.2968 | 67.9245 | 79.5918 | 99.0360 | 36 | 17 | 39 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | homalt | 80.9524 | 68.0000 | 100.0000 | 98.5650 | 17 | 8 | 19 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | * | 76.0632 | 67.8689 | 86.5079 | 98.0285 | 207 | 98 | 218 | 34 | 5 | 14.7059 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | het | 74.0557 | 68.4211 | 80.7018 | 98.2243 | 130 | 60 | 138 | 33 | 5 | 15.1515 | |
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.7899 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m1_e0 | homalt | 81.1033 | 68.8073 | 98.7500 | 97.0105 | 75 | 34 | 79 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | * | 76.4380 | 68.2779 | 86.8132 | 98.1240 | 226 | 105 | 237 | 36 | 5 | 13.8889 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | het | 74.7095 | 69.0476 | 81.3830 | 98.2825 | 145 | 65 | 153 | 35 | 5 | 14.2857 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.8188 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | homalt | 81.0457 | 68.6957 | 98.8095 | 97.2495 | 79 | 36 | 83 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | * | 76.5945 | 68.4685 | 86.9091 | 98.1619 | 228 | 105 | 239 | 36 | 5 | 13.8889 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | het | 74.8369 | 69.1943 | 81.4815 | 98.3230 | 146 | 65 | 154 | 35 | 5 | 14.2857 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.8221 | 2 | 4 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | homalt | 81.2379 | 68.9655 | 98.8235 | 97.2835 | 80 | 36 | 84 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_siren | * | 79.6077 | 71.8219 | 89.2868 | 89.6136 | 5322 | 2088 | 5709 | 685 | 78 | 11.3869 | |
| gduggal-snapplat | INDEL | * | map_siren | het | 79.1743 | 73.0923 | 86.3603 | 90.4763 | 3295 | 1213 | 3552 | 561 | 54 | 9.6257 | |
| gduggal-snapplat | INDEL | * | map_siren | hetalt | 28.1292 | 17.4089 | 73.2143 | 97.8495 | 43 | 204 | 41 | 15 | 8 | 53.3333 | |
| gduggal-snapplat | INDEL | * | map_siren | homalt | 83.6919 | 74.7269 | 95.1011 | 85.8909 | 1984 | 671 | 2116 | 109 | 16 | 14.6789 | |
| gduggal-snapplat | INDEL | * | segdup | * | 77.9673 | 71.4789 | 85.7514 | 96.5099 | 1827 | 729 | 1980 | 329 | 27 | 8.2067 | |
| gduggal-snapplat | INDEL | * | segdup | het | 76.3682 | 71.8281 | 81.5210 | 97.0363 | 1053 | 413 | 1147 | 260 | 13 | 5.0000 | |
| gduggal-snapplat | INDEL | * | segdup | hetalt | 55.6430 | 40.0000 | 91.3793 | 97.9993 | 52 | 78 | 53 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | * | segdup | homalt | 82.9294 | 75.2083 | 92.4171 | 94.6528 | 722 | 238 | 780 | 64 | 13 | 20.3125 | |
| gduggal-snapplat | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9982 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | tech_badpromoters | * | 41.1326 | 31.5789 | 58.9744 | 81.6901 | 24 | 52 | 23 | 16 | 1 | 6.2500 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | het | 34.2146 | 28.2051 | 43.4783 | 84.7682 | 11 | 28 | 10 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | * | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | tech_badpromoters | homalt | 53.0612 | 39.3939 | 81.2500 | 71.9298 | 13 | 20 | 13 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||