PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80451-80500 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 70.0082 | 55.7522 | 94.0594 | 98.0524 | 63 | 50 | 95 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.5517 | 1 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 70.3456 | 56.1404 | 94.1748 | 98.0570 | 64 | 50 | 97 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 75.4491 | 63.6364 | 92.6471 | 98.4019 | 42 | 24 | 63 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.6292 | 1 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 62.0591 | 45.6522 | 96.8750 | 96.6562 | 21 | 25 | 31 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_siren | * | 88.5587 | 81.9301 | 96.3544 | 82.1964 | 2462 | 543 | 2643 | 100 | 24 | 24.0000 | |
| qzeng-custom | INDEL | I1_5 | map_siren | het | 87.6104 | 81.4396 | 94.7930 | 85.2134 | 1369 | 312 | 1511 | 83 | 20 | 24.0964 | |
| qzeng-custom | INDEL | I1_5 | map_siren | hetalt | 88.0000 | 78.5714 | 100.0000 | 86.0806 | 88 | 24 | 38 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_siren | homalt | 90.0289 | 82.9208 | 98.4698 | 74.4832 | 1005 | 207 | 1094 | 17 | 4 | 23.5294 | |
| qzeng-custom | INDEL | I1_5 | segdup | * | 97.9371 | 97.9226 | 97.9516 | 94.4656 | 1037 | 22 | 1052 | 22 | 8 | 36.3636 | |
| qzeng-custom | INDEL | I1_5 | segdup | het | 97.4851 | 97.5836 | 97.3868 | 95.7292 | 525 | 13 | 559 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | I1_5 | segdup | hetalt | 90.9091 | 83.3333 | 100.0000 | 95.9128 | 40 | 8 | 15 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | segdup | homalt | 99.1688 | 99.7886 | 98.5567 | 91.3377 | 472 | 1 | 478 | 7 | 6 | 85.7143 | |
| qzeng-custom | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 55.8140 | 22 | 0 | 19 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 8 | 0 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 13 | 0 | 11 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | * | * | 88.1501 | 86.9073 | 89.4289 | 48.1019 | 21573 | 3250 | 21640 | 2558 | 1057 | 41.3213 | |
| qzeng-custom | INDEL | I6_15 | * | het | 91.4351 | 95.6444 | 87.5806 | 52.1449 | 9596 | 437 | 11812 | 1675 | 583 | 34.8060 | |
| qzeng-custom | INDEL | I6_15 | * | hetalt | 81.2294 | 68.6820 | 99.3860 | 39.2080 | 5873 | 2678 | 3723 | 23 | 17 | 73.9130 | |
| qzeng-custom | INDEL | I6_15 | * | homalt | 92.4648 | 97.8362 | 87.6525 | 43.2864 | 6104 | 135 | 6105 | 860 | 457 | 53.1395 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | * | 92.2263 | 91.5275 | 92.9358 | 54.4267 | 4386 | 406 | 4473 | 340 | 144 | 42.3529 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | het | 94.4892 | 95.7962 | 93.2173 | 56.1507 | 2256 | 99 | 2625 | 191 | 60 | 31.4136 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | hetalt | 86.3689 | 76.2878 | 99.5200 | 53.0075 | 933 | 290 | 622 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | homalt | 93.7520 | 98.5997 | 89.3586 | 51.1570 | 1197 | 17 | 1226 | 146 | 83 | 56.8493 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | * | 75.9258 | 69.2571 | 84.0157 | 36.6439 | 6078 | 2698 | 5992 | 1140 | 884 | 77.5439 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | het | 84.7648 | 91.3462 | 79.0682 | 44.3175 | 190 | 18 | 2274 | 602 | 437 | 72.5914 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 81.2263 | 68.6424 | 99.4598 | 26.8379 | 5860 | 2677 | 3682 | 20 | 14 | 70.0000 | |
| qzeng-custom | INDEL | I6_15 | HG002compoundhet | homalt | 12.1241 | 90.3226 | 6.4982 | 46.3178 | 28 | 3 | 36 | 518 | 433 | 83.5907 | |
| qzeng-custom | INDEL | I6_15 | decoy | * | 0.0000 | 0.0000 | 99.9286 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I6_15 | decoy | homalt | 0.0000 | 0.0000 | 99.5595 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | func_cds | * | 79.2079 | 93.0233 | 68.9655 | 30.1205 | 40 | 3 | 40 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | func_cds | het | 77.4194 | 100.0000 | 63.1579 | 33.3333 | 24 | 0 | 24 | 14 | 2 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | func_cds | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 2 | 2 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | func_cds | homalt | 84.8485 | 93.3333 | 77.7778 | 25.0000 | 14 | 1 | 14 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 77.6395 | 70.9330 | 85.7466 | 65.4687 | 593 | 243 | 758 | 126 | 94 | 74.6032 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.6593 | 88.6640 | 84.7432 | 65.8939 | 219 | 28 | 561 | 101 | 76 | 75.2475 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 75.1472 | 60.1887 | 100.0000 | 53.6122 | 319 | 211 | 122 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.1234 | 93.2203 | 75.0000 | 71.9101 | 55 | 4 | 75 | 25 | 18 | 72.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.9466 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||