PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80401-80450 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 87.1795 | 77.2727 | 100.0000 | 89.4180 | 34 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 82.5627 | 71.8147 | 97.0940 | 78.6652 | 372 | 146 | 568 | 17 | 3 | 17.6471 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 81.9098 | 72.2953 | 94.4737 | 87.2301 | 989 | 379 | 1436 | 84 | 16 | 19.0476 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 80.9908 | 72.0050 | 92.5390 | 89.7242 | 571 | 222 | 831 | 67 | 13 | 19.4030 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 87.1795 | 77.2727 | 100.0000 | 90.2439 | 34 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 82.9231 | 72.3164 | 97.1761 | 79.6553 | 384 | 147 | 585 | 17 | 3 | 17.6471 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 81.9397 | 72.4014 | 94.3726 | 87.2379 | 1010 | 385 | 1459 | 87 | 16 | 18.3908 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 81.0781 | 72.2222 | 92.4092 | 89.7647 | 585 | 225 | 840 | 69 | 13 | 18.8406 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 90.4306 | 35 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 82.8272 | 72.2222 | 97.0827 | 79.5966 | 390 | 150 | 599 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 76.9125 | 63.8710 | 96.6463 | 93.7984 | 198 | 112 | 317 | 11 | 6 | 54.5455 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 76.0780 | 63.0208 | 95.9596 | 95.2868 | 121 | 71 | 190 | 8 | 4 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.6292 | 2 | 2 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 78.6104 | 65.7895 | 97.6378 | 87.2873 | 75 | 39 | 124 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 79.4806 | 67.1084 | 97.4457 | 90.6775 | 557 | 273 | 763 | 20 | 11 | 55.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | het | 78.1967 | 65.8436 | 96.2555 | 92.8784 | 320 | 166 | 437 | 17 | 9 | 52.9412 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 86.6667 | 76.4706 | 100.0000 | 91.4474 | 13 | 4 | 13 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 80.9911 | 68.5015 | 99.0506 | 83.1197 | 224 | 103 | 313 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 79.5482 | 67.3279 | 97.1883 | 91.0248 | 577 | 280 | 795 | 23 | 11 | 47.8261 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | het | 77.9993 | 65.7948 | 95.7627 | 93.1215 | 327 | 170 | 452 | 20 | 9 | 45.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.2353 | 78.9474 | 100.0000 | 91.7160 | 15 | 4 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 81.2948 | 68.9150 | 99.0964 | 84.0614 | 235 | 106 | 329 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 79.7441 | 67.5862 | 97.2356 | 91.0364 | 588 | 282 | 809 | 23 | 11 | 47.8261 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 78.2603 | 66.1417 | 95.8159 | 93.1509 | 336 | 172 | 458 | 20 | 9 | 45.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.2353 | 78.9474 | 100.0000 | 91.8605 | 15 | 4 | 14 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 81.4279 | 69.0962 | 99.1176 | 84.0450 | 237 | 106 | 337 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 73.9830 | 60.2273 | 95.8824 | 96.2121 | 106 | 70 | 163 | 7 | 4 | 57.1429 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 74.5771 | 61.3208 | 95.1456 | 97.1594 | 65 | 41 | 98 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 75.9428 | 62.2530 | 97.3510 | 93.4867 | 315 | 191 | 441 | 12 | 8 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | het | 76.1696 | 62.8763 | 96.5909 | 95.0884 | 188 | 111 | 255 | 9 | 6 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 95.0820 | 5 | 4 | 6 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 75.7686 | 61.6162 | 98.3607 | 87.4486 | 122 | 76 | 180 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 76.0546 | 62.4277 | 97.2917 | 93.6809 | 324 | 195 | 467 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 76.2838 | 63.1068 | 96.4158 | 95.2136 | 195 | 114 | 269 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 71.4286 | 55.5556 | 100.0000 | 94.8529 | 5 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 75.8531 | 61.6915 | 98.4536 | 88.1055 | 124 | 77 | 191 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 76.1376 | 62.5235 | 97.3306 | 93.7113 | 332 | 199 | 474 | 13 | 8 | 61.5385 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 76.0534 | 62.7760 | 96.4539 | 95.2493 | 199 | 118 | 272 | 10 | 6 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 94.8905 | 6 | 4 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 76.2868 | 62.2549 | 98.4848 | 88.1508 | 127 | 77 | 195 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 65.8625 | 54.1667 | 84.0000 | 99.1992 | 13 | 11 | 21 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 71.7949 | 66.6667 | 77.7778 | 99.3080 | 10 | 5 | 14 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 98.4979 | 3 | 6 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 70.4907 | 56.6038 | 93.4066 | 98.0769 | 60 | 46 | 85 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 77.2881 | 66.6667 | 91.9355 | 98.3812 | 40 | 20 | 57 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7654 | 1 | 1 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |