PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80351-80400 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.6329 | 89.7120 | 95.7505 | 61.0009 | 14423 | 1654 | 21721 | 964 | 836 | 86.7220 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 95.7862 | 96.4642 | 95.1177 | 63.6639 | 6193 | 227 | 14027 | 720 | 615 | 85.4167 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 87.0799 | 77.3066 | 99.6819 | 40.4484 | 4558 | 1338 | 1880 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8442 | 97.6336 | 96.0674 | 58.0189 | 3672 | 89 | 5814 | 238 | 216 | 90.7563 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.1226 | 86.4620 | 96.3144 | 38.7578 | 4956 | 776 | 18319 | 701 | 658 | 93.8659 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4259 | 96.9186 | 95.9382 | 41.0474 | 1321 | 42 | 12117 | 513 | 483 | 94.1520 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 89.3374 | 80.8410 | 99.8295 | 33.0289 | 3076 | 729 | 1757 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.5341 | 99.1135 | 96.0043 | 33.9044 | 559 | 5 | 4445 | 185 | 173 | 93.5135 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 46.0465 | 32.0388 | 81.8182 | 76.5957 | 66 | 140 | 18 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.3333 | 77.7778 | 80.9524 | 75.8621 | 21 | 6 | 17 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 25.1397 | 100.0000 | 45 | 134 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 100.0000 | 80.0000 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7953 | 98.1565 | 99.4425 | 52.2443 | 2609 | 49 | 25329 | 142 | 36 | 25.3521 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9865 | 98.4716 | 99.5069 | 53.0976 | 1353 | 21 | 15941 | 79 | 10 | 12.6582 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.5630 | 93.3544 | 100.0000 | 65.8940 | 295 | 21 | 412 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2899 | 99.2769 | 99.3030 | 49.7051 | 961 | 7 | 8976 | 63 | 26 | 41.2698 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.9744 | 0 | 1 | 0 | 19 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 99.9713 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 99.9783 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.0217 | 94.2549 | 97.8560 | 49.0716 | 3675 | 224 | 8535 | 187 | 123 | 65.7754 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3151 | 97.0053 | 97.6268 | 51.2109 | 1652 | 51 | 5389 | 131 | 84 | 64.1221 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 92.3995 | 86.2069 | 99.5506 | 43.8131 | 975 | 156 | 443 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2222 | 98.4038 | 98.0413 | 45.0797 | 1048 | 17 | 2703 | 54 | 37 | 68.5185 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 77.2082 | 72.8625 | 82.1053 | 86.6197 | 196 | 73 | 78 | 17 | 10 | 58.8235 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9185 | 72.5490 | 84.1463 | 86.5132 | 37 | 14 | 69 | 13 | 7 | 53.8462 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.4883 | 73.2719 | 80.0000 | 75.0000 | 159 | 58 | 4 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 62.5000 | 90.2439 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.3468 | 96.4762 | 98.2332 | 41.6856 | 1013 | 37 | 2780 | 50 | 22 | 44.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3975 | 98.7234 | 98.0737 | 43.5889 | 464 | 6 | 1782 | 35 | 13 | 37.1429 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.3338 | 91.6933 | 99.2754 | 35.5140 | 287 | 26 | 137 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2635 | 98.1273 | 98.4000 | 38.2934 | 262 | 5 | 861 | 14 | 8 | 57.1429 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 86.3636 | 76.0000 | 100.0000 | 78.9474 | 19 | 6 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 75.0000 | 1 | 1 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 78.2609 | 100.0000 | 18 | 5 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 78.8389 | 67.0350 | 95.6882 | 90.8414 | 364 | 179 | 577 | 26 | 10 | 38.4615 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 77.6186 | 65.9509 | 94.3020 | 93.0987 | 215 | 111 | 331 | 20 | 8 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.1739 | 6 | 3 | 9 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 80.6497 | 68.7500 | 97.5309 | 82.4295 | 143 | 65 | 237 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 81.6840 | 71.9940 | 94.3881 | 86.6528 | 964 | 375 | 1396 | 83 | 16 | 19.2771 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 80.8356 | 71.8147 | 92.4485 | 89.2761 | 558 | 219 | 808 | 66 | 13 | 19.6970 | |