PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80251-80300 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.1290 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.4955 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.3415 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.6897 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 96.4072 | 1 | 0 | 3 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 95.7265 | 1 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 97.1429 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_siren | * | 65.7764 | 70.9302 | 61.3208 | 81.7556 | 61 | 25 | 65 | 41 | 5 | 12.1951 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | het | 63.1714 | 73.4694 | 55.4054 | 79.7814 | 36 | 13 | 41 | 33 | 4 | 12.1212 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 84.0909 | 10 | 6 | 7 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | * | 85.3598 | 91.4894 | 80.0000 | 93.4132 | 43 | 4 | 44 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | het | 85.8034 | 91.6667 | 80.6452 | 93.8370 | 22 | 2 | 25 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7342 | 2 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | segdup | homalt | 87.8049 | 100.0000 | 78.2609 | 90.9091 | 19 | 0 | 18 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | * | 90.9091 | 100.0000 | 83.3333 | 53.8462 | 4 | 0 | 5 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | het | 85.7143 | 100.0000 | 75.0000 | 42.8571 | 2 | 0 | 3 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | * | * | 97.7958 | 96.8327 | 98.7782 | 55.3353 | 145892 | 4772 | 145850 | 1804 | 1184 | 65.6319 | |
| qzeng-custom | INDEL | I1_5 | * | het | 98.4046 | 98.3920 | 98.4173 | 59.0408 | 77770 | 1271 | 82639 | 1329 | 852 | 64.1084 | |
| qzeng-custom | INDEL | I1_5 | * | hetalt | 84.6275 | 73.4792 | 99.7637 | 61.8865 | 8226 | 2969 | 3378 | 8 | 6 | 75.0000 | |
| qzeng-custom | INDEL | I1_5 | * | homalt | 99.1725 | 99.1196 | 99.2255 | 48.3268 | 59896 | 532 | 59833 | 467 | 326 | 69.8073 | |
| qzeng-custom | INDEL | I1_5 | HG002complexvar | * | 98.4325 | 97.7100 | 99.1658 | 52.3895 | 32599 | 764 | 32572 | 274 | 135 | 49.2701 | |
| qzeng-custom | INDEL | I1_5 | HG002complexvar | het | 98.6121 | 98.1362 | 99.0926 | 55.1360 | 17850 | 339 | 18675 | 171 | 70 | 40.9357 | |
| qzeng-custom | INDEL | I1_5 | HG002complexvar | hetalt | 90.5910 | 83.2561 | 99.3432 | 68.2647 | 1437 | 289 | 605 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | HG002complexvar | homalt | 99.1245 | 98.9887 | 99.2607 | 46.5706 | 13312 | 136 | 13292 | 99 | 61 | 61.6162 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | * | 82.4804 | 75.6151 | 90.7168 | 64.6037 | 9343 | 3013 | 9391 | 961 | 822 | 85.5359 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | het | 92.1803 | 94.9412 | 89.5755 | 66.2595 | 807 | 43 | 5740 | 668 | 571 | 85.4790 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 84.6325 | 73.4723 | 99.7902 | 54.7416 | 8212 | 2965 | 3329 | 7 | 5 | 71.4286 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | homalt | 68.8793 | 98.4802 | 52.9605 | 78.9109 | 324 | 5 | 322 | 286 | 246 | 86.0140 | |
| qzeng-custom | INDEL | I1_5 | decoy | * | 0.0000 | 0.0000 | 99.9897 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | I1_5 | decoy | homalt | 0.0000 | 0.0000 | 99.9475 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 34.7670 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | func_cds | het | 97.4503 | 98.3051 | 96.6102 | 48.2456 | 58 | 1 | 57 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.6098 | 119 | 0 | 122 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 84.1984 | 77.2530 | 92.5161 | 66.6953 | 1423 | 419 | 1434 | 116 | 91 | 78.4483 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.5170 | 91.6918 | 91.3428 | 68.3622 | 607 | 55 | 1034 | 98 | 77 | 78.5714 | |