PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
80001-80050 / 86044 show all
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661
qzeng-customSNPtiHG002complexvar*
99.1315
98.4529
99.8194
18.2769
5005717866493623893400
44.7928
qzeng-customSNPtiHG002complexvarhet
99.0720
98.3388
99.8162
18.0479
3095375229307433566153
27.0318
qzeng-customSNPtiHG002complexvarhetalt
97.0149
94.2029
100.0000
39.1447
1951218500
qzeng-customSNPtiHG002complexvarhomalt
99.2303
98.6432
99.8245
18.6252
1908392625186005327247
75.5352
qzeng-customSNPtiHG002compoundhet*
98.4045
98.1577
98.6526
40.8633
171563221771924286
35.5372
qzeng-customSNPtiHG002compoundhethet
98.0838
97.7380
98.4320
42.6883
92902151173918745
24.0642
qzeng-customSNPtiHG002compoundhethetalt
98.4211
96.8912
100.0000
21.9547
5611855100
qzeng-customSNPtiHG002compoundhethomalt
98.8966
98.7963
98.9971
38.0829
73058954295541
74.5455
qzeng-customSNPtidecoy*
0.0000
0.0000
100.0000
99.9987
00200
qzeng-customSNPtidecoyhet
0.0000
100.0000
00000
qzeng-customSNPtidecoyhetalt
0.0000
100.0000
00000
qzeng-customSNPtidecoyhomalt
0.0000
0.0000
100.0000
99.9922
00200
qzeng-customSNPtifunc_cds*
99.7894
99.8622
99.7168
26.7032
137681913732394
10.2564
qzeng-customSNPtifunc_cdshet
99.7296
99.8589
99.6007
30.7386
8492128481341
2.9412
qzeng-customSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
46.6667
80800
qzeng-customSNPtifunc_cdshomalt
99.8860
99.8673
99.9047
18.9998
52687524353
60.0000
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
97.6562
98.9840
96.3636
77.0001
32153332331229
7.3771
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.6977
98.9130
94.5794
80.5719
20022220241166
5.1724
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.3033
99.1013
99.5062
65.8995
121311120963
50.0000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0978
99.2811
98.9152
61.5160
277582012790230667
21.8954
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.8622
99.1709
98.5554
65.0606
177031481787426243
16.4122
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
83.3333
83.3333
83.3333
85.7143
51511
100.0000
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5290
99.4853
99.5728
52.8503
1005052100234323
53.4884
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8254
98.0798
97.5723
79.1147
3054559830586761104
13.6662
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.2458
97.9315
96.5697
82.2940
191744051928468559
8.6131
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
96.5318
1201200
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8278
98.3293
99.3313
69.2512
11359193112907645
59.2105
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.5900
99.3241
97.8667
64.6435
2939202936644
6.2500
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.0362
99.2900
96.8136
69.3472
1818131823602
3.3333
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5105
99.3794
99.6419
52.1832
11217111342
50.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.1805
99.6759
98.6901
56.5693
3998133993535
9.4340
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.8699
99.5676
98.1818
59.8602
2533112538472
4.2553
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7261
99.8636
99.5890
49.1643
14642145463
50.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3861
99.7540
99.0208
56.4034
243362427243
12.5000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.2117
99.6203
98.8065
58.3355
157461573191
5.2632
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
66.6667
10100
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7078
100.0000
99.4172
52.2803
858085352
40.0000
qzeng-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
88.9582
95.4751
83.2740
92.7259
21110234474
8.5106