PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79951-80000 / 86044 show all
qzeng-customSNP*map_l150_m0_e0het
75.9917
64.6851
92.0882
93.9068
513628045098438367
83.7900
qzeng-customSNP*map_l150_m0_e0hetalt
80.0000
66.6667
100.0000
98.0392
21200
qzeng-customSNP*map_l150_m0_e0homalt
74.2731
59.5011
98.8021
79.7981
2433165623922929
100.0000
qzeng-customSNP*map_l150_m1_e0*
80.7203
69.2737
96.6985
86.4603
21204940520971716612
85.4749
qzeng-customSNP*map_l150_m1_e0het
81.0937
70.5218
95.3942
89.4771
13622569413504652548
84.0491
qzeng-customSNP*map_l150_m1_e0hetalt
75.0000
60.0000
100.0000
92.6829
1281200
qzeng-customSNP*map_l150_m1_e0homalt
80.0720
67.1516
99.1488
70.4941
7570370374556464
100.0000
qzeng-customSNP*map_l150_m2_e0*
81.2952
70.0678
96.8072
87.0114
22318953422073728620
85.1648
qzeng-customSNP*map_l150_m2_e0het
81.6474
71.2611
95.5780
89.7912
14347578614222658550
83.5866
qzeng-customSNP*map_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.6842
1281200
qzeng-customSNP*map_l150_m2_e0homalt
80.6830
68.0315
99.1149
73.2795
7959374078397070
100.0000
qzeng-customSNP*map_l150_m2_e1*
81.4031
70.2204
96.8222
87.0167
22618959222364734626
85.2861
qzeng-customSNP*map_l150_m2_e1het
81.7356
71.3795
95.6069
89.7988
14535582814407662554
83.6858
qzeng-customSNP*map_l150_m2_e1hetalt
75.0000
60.0000
100.0000
93.7173
1281200
qzeng-customSNP*map_l150_m2_e1homalt
80.8266
68.2422
99.1019
73.2731
8071375679457272
100.0000
qzeng-customSNP*map_l250_m0_e0*
69.9445
58.1265
87.7944
98.0283
12418941230171131
76.6082
qzeng-customSNP*map_l250_m0_e0het
70.2798
60.2258
84.3633
98.3296
907599901167127
76.0479
qzeng-customSNP*map_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customSNP*map_l250_m0_e0homalt
69.0753
53.1002
98.7988
95.2759
33429532944
100.0000
qzeng-customSNP*map_l250_m1_e0*
74.6091
62.6419
92.2286
95.4856
452426984486378314
83.0688
qzeng-customSNP*map_l250_m1_e0het
75.1142
64.7950
89.3431
96.3888
308116743060365301
82.4658
qzeng-customSNP*map_l250_m1_e0hetalt
40.0000
25.0000
100.0000
99.0991
13100
qzeng-customSNP*map_l250_m1_e0homalt
73.6061
58.5465
99.0960
88.7560
1442102114251313
100.0000
qzeng-customSNP*map_l250_m2_e0*
75.7461
64.0330
92.7037
95.4455
504928365006394328
83.2487
qzeng-customSNP*map_l250_m2_e0het
76.2572
66.0955
90.1111
96.3398
343317613408374309
82.6203
qzeng-customSNP*map_l250_m2_e0hetalt
57.1429
40.0000
100.0000
98.3740
23200
qzeng-customSNP*map_l250_m2_e0homalt
74.7183
60.0894
98.7624
89.3086
1614107215962019
95.0000
qzeng-customSNP*map_l250_m2_e1*
75.9076
64.2294
92.7764
95.4610
513028575086396330
83.3333
qzeng-customSNP*map_l250_m2_e1het
76.4225
66.2804
90.2293
96.3549
348917753463375310
82.6667
qzeng-customSNP*map_l250_m2_e1hetalt
57.1429
40.0000
100.0000
98.3871
23200
qzeng-customSNP*map_l250_m2_e1homalt
74.8704
60.3017
98.7211
89.3099
1639107916212120
95.2381
qzeng-customSNP*map_siren*
92.3867
86.6004
99.0016
63.6130
126634195941250471261903
71.6098
qzeng-customSNP*map_sirenhet
92.1648
86.4602
98.6753
68.8551
7867112320779141046710
67.8776
qzeng-customSNP*map_sirenhetalt
86.0912
76.5432
98.3607
83.9474
62196010
0.0000
qzeng-customSNP*map_sirenhomalt
92.7642
86.8464
99.5474
49.2732
47901725547073214193
90.1869
qzeng-customSNP*segdup*
98.6778
98.8634
98.4928
92.2719
277483192751242168
16.1520
qzeng-customSNP*segduphet
98.3153
98.7007
97.9329
93.6755
170922251696135811
3.0726
qzeng-customSNP*segduphetalt
100.0000
100.0000
100.0000
97.9228
70700
qzeng-customSNP*segduphomalt
99.2653
99.1250
99.4061
87.8458
1064994105446357
90.4762
qzeng-customSNP*segdupwithalt*
0.0000
100.0000
00000
qzeng-customSNP*segdupwithalthet
0.0000
100.0000
00000
qzeng-customSNP*segdupwithalthetalt
0.0000
100.0000
00000
qzeng-customSNP*segdupwithalthomalt
0.0000
100.0000
00000
qzeng-customSNP*tech_badpromoters*
96.8273
98.0892
95.5975
47.8689
154315271
14.2857
qzeng-customSNP*tech_badpromotershet
95.5975
98.7013
92.6829
49.3827
7617660
0.0000
qzeng-customSNP*tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNP*tech_badpromotershomalt
98.0970
97.5000
98.7013
46.1538
7827611
100.0000
qzeng-customSNPti**
99.5194
99.2515
99.7887
20.8361
20699071561120631264368997
22.8251
qzeng-customSNPti*het
99.4567
99.1981
99.7166
23.5601
12716181027912696813608520
14.4124
qzeng-customSNPti*hetalt
98.0808
96.9072
99.2832
55.8893
5641855444
100.0000