PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79901-79950 / 86044 show all
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
97.5900
97.5610
97.6190
93.3754
4014111
100.0000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.4064
99.1978
99.6159
41.7997
7296597261286
21.4286
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.2828
99.0685
99.4980
45.3418
4573434559232
8.6957
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.6334
99.4522
99.8153
34.5977
272315270254
80.0000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_51to200*
70.5882
66.6667
75.0000
98.1043
63621
50.0000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
98.3146
61600
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
96.9697
02021
50.0000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
100.0000
00000
qzeng-customSNP*map_l100_m0_e0*
82.6366
72.0228
96.9194
83.3401
23653918823407744630
84.6774
qzeng-customSNP*map_l100_m0_e0het
82.7631
72.8602
95.7815
86.9859
15450575515326675562
83.2593
qzeng-customSNP*map_l100_m0_e0hetalt
81.4815
68.7500
100.0000
92.3077
1151100
qzeng-customSNP*map_l100_m0_e0homalt
82.4060
70.4991
99.1522
62.7863
8192342880706968
98.5507
qzeng-customSNP*map_l100_m1_e0*
87.6931
79.1127
98.3611
75.8509
572801512356597943784
83.1389
qzeng-customSNP*map_l100_m1_e0het
87.7038
79.5123
97.7769
80.6669
36066929335714812655
80.6650
qzeng-customSNP*map_l100_m1_e0hetalt
81.1594
68.2927
100.0000
88.6179
28132800
qzeng-customSNP*map_l100_m1_e0homalt
87.6866
78.4579
99.3758
57.2534
21186581720855131129
98.4733
qzeng-customSNP*map_l100_m2_e0*
87.8989
79.4670
98.3325
77.0630
587771518758084985789
80.1015
qzeng-customSNP*map_l100_m2_e0het
87.9050
79.8638
97.7467
81.4691
37056934336699846656
77.5414
qzeng-customSNP*map_l100_m2_e0hetalt
81.6901
69.0476
100.0000
89.1791
29132900
qzeng-customSNP*map_l100_m2_e0homalt
87.8998
78.8141
99.3533
60.6693
21692583121356139133
95.6835
qzeng-customSNP*map_l100_m2_e1*
87.9879
79.6031
98.3471
77.0361
594931524458784988790
79.9595
qzeng-customSNP*map_l100_m2_e1het
87.9932
79.9949
97.7685
81.4422
37516938237154848656
77.3585
qzeng-customSNP*map_l100_m2_e1hetalt
82.1918
69.7674
100.0000
88.8476
30133000
qzeng-customSNP*map_l100_m2_e1homalt
87.9899
78.9574
99.3560
60.6459
21947584921600140134
95.7143
qzeng-customSNP*map_l125_m0_e0*
78.3239
66.3606
95.5494
88.8093
12864652112731593502
84.6543
qzeng-customSNP*map_l125_m0_e0het
78.6100
67.5932
93.9173
91.2651
856041048492550460
83.6364
qzeng-customSNP*map_l125_m0_e0hetalt
61.5385
44.4444
100.0000
96.6942
45400
qzeng-customSNP*map_l125_m0_e0homalt
77.7882
64.0644
98.9949
72.2676
4300241242354342
97.6744
qzeng-customSNP*map_l125_m1_e0*
83.4865
72.9742
97.5374
82.2302
330771225032716826701
84.8668
qzeng-customSNP*map_l125_m1_e0het
83.6399
73.7567
96.5816
86.1149
20941745120766735611
83.1293
qzeng-customSNP*map_l125_m1_e0hetalt
80.0000
66.6667
100.0000
89.7959
20102000
qzeng-customSNP*map_l125_m1_e0homalt
83.2331
71.6711
99.2430
64.3421
121164789119309190
98.9011
qzeng-customSNP*map_l125_m2_e0*
83.8659
73.5398
97.5657
83.0916
343601236333987848710
83.7264
qzeng-customSNP*map_l125_m2_e0het
84.0186
74.3127
96.6407
86.6277
21787753121605751614
81.7577
qzeng-customSNP*map_l125_m2_e0hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNP*map_l125_m2_e0homalt
83.6128
72.2475
99.2214
67.7362
125534822123629796
98.9691
qzeng-customSNP*map_l125_m2_e1*
83.9768
73.7003
97.5835
83.0865
347881241434406852714
83.8028
qzeng-customSNP*map_l125_m2_e1het
84.1292
74.4636
96.6784
86.6172
22071756921888752615
81.7819
qzeng-customSNP*map_l125_m2_e1hetalt
80.0000
66.6667
100.0000
91.1111
20102000
qzeng-customSNP*map_l125_m2_e1homalt
83.7240
72.4219
99.2062
67.7495
1269748351249810099
99.0000
qzeng-customSNP*map_l150_m0_e0*
75.4274
62.9239
94.1324
92.2685
757144617492467396
84.7966