PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79851-79900 / 86044 show all
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0167
99.6391
98.4019
66.3620
248592463401
2.5000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8173
100.0000
99.6353
62.2834
13830136652
40.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
88.7085
94.0415
83.9479
92.5405
363233877411
14.8649
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
85.6095
92.7536
79.4872
92.6630
25620279729
12.5000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.7252
97.2727
98.1818
92.1090
107310822
100.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
94.7046
97.0188
92.4983
89.7173
263681276222460
26.7857
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
92.8865
96.0317
89.9408
90.7338
169470182420445
22.0588
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
20200
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.3734
98.8433
97.9079
86.6050
940119362015
75.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
95.6210
97.3818
93.9229
89.2161
230662241115650
32.0513
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.1461
96.4333
91.9648
90.4466
146054156813736
26.2774
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.7143
20200
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.4218
99.0610
97.7907
85.5292
84488411914
73.6842
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7826
98.8983
96.6918
85.1220
106821191075636869
18.7500
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
96.9150
98.5617
95.3224
87.1181
678499688833849
14.4970
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.2500
30300
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.3593
99.4891
99.2298
79.0524
38952038653020
66.6667
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
96.9374
98.0844
95.8169
84.1185
2816255028220123290
7.3052
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
97.0120
1501500
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.9649
98.5390
99.3944
72.2038
167272481657710158
57.4257
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50*
98.3281
98.8960
97.7666
73.6710
9585107971822262
27.9279
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50het
97.7610
98.5407
96.9935
76.3552
614591629119548
24.6154
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
96.2963
10100
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.3772
99.5369
99.2181
66.4594
34391634262714
51.8519
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_51to200*
80.0000
80.9524
79.0698
97.5058
3483491
11.1111
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_51to200het
71.4286
74.0741
68.9655
97.9374
2072091
11.1111
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
96.5517
93.3333
100.0000
95.5836
1411400
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6848
99.5401
99.8300
56.5387
170987917030299
31.0345
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.6338
99.4406
99.8276
58.0012
110226211004191
5.2632
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7774
99.7208
99.8342
53.5684
6071176021108
80.0000
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
98.6752
99.5050
97.8590
48.2393
18093901800939421
5.3300
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.1157
99.4315
96.8342
51.8964
1136865113483719
2.4259
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
68.4211
50511
100.0000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.6500
99.6294
99.6706
40.2309
67202566562211
50.0000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_51to200*
85.2476
92.3077
79.1908
94.6916
13211137369
25.0000
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_51to200het
80.8643
90.1961
73.2824
95.0076
921096358
22.8571
qzeng-customSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
100.0000
00000