PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
79801-79850 / 86044 show all
qzeng-customINDELI6_15tech_badpromotershomalt
66.6667
66.6667
66.6667
57.1429
21211
100.0000
qzeng-customSNP***
99.4966
99.2413
99.7533
22.5407
303145823176301298374521530
20.5314
qzeng-customSNP**het
99.4239
99.1899
99.6590
25.4299
18584231517818500616331818
12.9205
qzeng-customSNP**hetalt
98.2537
97.2445
99.2840
55.4492
8472483265
83.3333
qzeng-customSNP**homalt
99.6134
99.3243
99.9041
17.3884
1172188797411620901115707
63.4081
qzeng-customSNP*HG002complexvar*
99.1204
98.4430
99.8072
19.9398
742639117467238431398631
45.1359
qzeng-customSNP*HG002complexvarhet
99.0563
98.3261
99.7975
19.7489
4577087792449025911250
27.4424
qzeng-customSNP*HG002complexvarhetalt
97.3511
95.1613
99.6441
38.9130
2951528011
100.0000
qzeng-customSNP*HG002complexvarhomalt
99.2256
98.6350
99.8233
20.2251
2846363939274538486380
78.1893
qzeng-customSNP*HG002compoundhet*
98.2824
98.1489
98.4164
46.9711
2534447825604412148
35.9223
qzeng-customSNP*HG002compoundhethet
97.8777
97.6372
98.1193
49.7459
138433351659131873
22.9560
qzeng-customSNP*HG002compoundhethetalt
98.5292
97.2158
99.8786
21.9697
8382482311
100.0000
qzeng-customSNP*HG002compoundhethomalt
98.8868
98.8963
98.8772
42.3069
1066311981909374
79.5699
qzeng-customSNP*decoy*
0.0000
0.0000
100.0000
99.9992
00200
qzeng-customSNP*decoyhet
0.0000
100.0000
00000
qzeng-customSNP*decoyhetalt
0.0000
100.0000
00000
qzeng-customSNP*decoyhomalt
0.0000
0.0000
100.0000
99.9952
00200
qzeng-customSNP*func_cds*
99.7598
99.8182
99.7016
28.7413
181173318040544
7.4074
qzeng-customSNP*func_cdshet
99.6863
99.8118
99.5610
32.9992
111402111112491
2.0408
qzeng-customSNP*func_cdshetalt
100.0000
100.0000
100.0000
54.5455
1001000
qzeng-customSNP*func_cdshomalt
99.8779
99.8281
99.9278
20.5349
696712691853
60.0000
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
97.4331
98.7825
96.1201
76.9651
470658470719022
11.5789
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
96.3797
98.5411
94.3110
80.2460
297244298418015
8.3333
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.3109
99.1991
99.4230
66.8389
1734141723107
70.0000
qzeng-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0366
99.3834
98.6923
64.9734
5528834355243732105
14.3443
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.7057
99.2433
98.1739
67.8653
351512683526865660
9.1463
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.3077
92.3077
92.3077
82.1918
1211211
100.0000
qzeng-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6297
99.6336
99.6257
58.2037
2012574199637544
58.6667
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
96.9374
98.0844
95.8169
84.1185
2816255028220123290
7.3052
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
97.0120
1501500
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.9649
98.5390
99.3944
72.2038
167272481657710158
57.4257
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.5278
99.3248
97.7435
64.5151
4266294245987
7.1429
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.9190
99.2554
96.6182
68.9966
2666202657934
4.3011
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5632
99.4406
99.6861
52.5328
16009158853
60.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.1026
99.7251
98.4878
62.3729
6167176122946
6.3830
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.6961
99.6184
97.7906
64.7616
3916153895883
3.4091
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10100
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8211
99.9112
99.7312
57.1511
22502222663
50.0000
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3011
99.7679
98.8387
65.0271
386993830453
6.6667