PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
79551-79600 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 67.9335 | 76.4706 | 61.1111 | 99.5774 | 13 | 4 | 11 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 64.2857 | 90.0000 | 50.0000 | 99.5663 | 9 | 1 | 7 | 7 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.5964 | 2 | 2 | 4 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 94.3510 | 97.7144 | 91.2114 | 71.0965 | 5002 | 117 | 5376 | 518 | 61 | 11.7761 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5488 | 98.1667 | 89.3458 | 72.6223 | 2945 | 55 | 3346 | 399 | 43 | 10.7769 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.1215 | 83.6910 | 100.0000 | 74.7801 | 195 | 38 | 86 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4272 | 98.7275 | 94.2317 | 67.6240 | 1862 | 24 | 1944 | 119 | 18 | 15.1261 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1203 | 98.5371 | 97.7070 | 73.4654 | 3570 | 53 | 3835 | 90 | 21 | 23.3333 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.2409 | 98.9242 | 97.5670 | 75.1766 | 2115 | 23 | 2366 | 59 | 11 | 18.6441 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 92.2449 | 85.6061 | 100.0000 | 78.4553 | 113 | 19 | 53 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5178 | 99.1870 | 97.8576 | 69.7090 | 1342 | 11 | 1416 | 31 | 10 | 32.2581 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.8582 | 76.3275 | 79.4516 | 54.8804 | 4643 | 1440 | 6519 | 1686 | 1004 | 59.5492 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 82.4233 | 87.4656 | 77.9307 | 54.2101 | 1905 | 273 | 5378 | 1523 | 867 | 56.9271 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.0161 | 64.7448 | 98.1308 | 54.0773 | 1763 | 960 | 105 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.4697 | 82.4873 | 86.5497 | 58.4519 | 975 | 207 | 1036 | 161 | 135 | 83.8509 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 80.0000 | 100.0000 | 66.6667 | 98.3871 | 3 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.1481 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | * | 84.6327 | 75.3158 | 96.5801 | 84.0828 | 8348 | 2736 | 8331 | 295 | 249 | 84.4068 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | het | 85.0006 | 76.5993 | 95.4718 | 87.4215 | 5532 | 1690 | 5524 | 262 | 216 | 82.4427 | |
| qzeng-custom | SNP | tv | map_l100_m0_e0 | hetalt | 81.4815 | 68.7500 | 100.0000 | 92.3077 | 11 | 5 | 11 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m0_e0 | homalt | 83.9304 | 72.9329 | 98.8335 | 64.8615 | 2805 | 1041 | 2796 | 33 | 33 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | * | 88.0506 | 79.8294 | 98.1596 | 77.4096 | 19559 | 4942 | 19521 | 366 | 304 | 83.0601 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | het | 88.3933 | 80.7745 | 97.5991 | 81.8251 | 12453 | 2964 | 12439 | 306 | 244 | 79.7386 | |
| qzeng-custom | SNP | tv | map_l100_m1_e0 | hetalt | 81.1594 | 68.2927 | 100.0000 | 88.6179 | 28 | 13 | 28 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m1_e0 | homalt | 87.4842 | 78.2705 | 99.1566 | 59.7237 | 7078 | 1965 | 7054 | 60 | 60 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | * | 88.2470 | 80.1862 | 98.1096 | 78.5989 | 20073 | 4960 | 20033 | 386 | 305 | 79.0155 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | het | 88.5810 | 81.1371 | 97.5288 | 82.6321 | 12801 | 2976 | 12787 | 324 | 244 | 75.3086 | |
| qzeng-custom | SNP | tv | map_l100_m2_e0 | hetalt | 81.6901 | 69.0476 | 100.0000 | 89.1791 | 29 | 13 | 29 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e0 | homalt | 87.6918 | 78.6086 | 99.1482 | 62.9624 | 7243 | 1971 | 7217 | 62 | 61 | 98.3871 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | * | 88.3100 | 80.2832 | 98.1201 | 78.5916 | 20298 | 4985 | 20251 | 388 | 306 | 78.8660 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | het | 88.6428 | 81.2273 | 97.5483 | 82.6203 | 12946 | 2992 | 12931 | 325 | 244 | 75.0769 | |
| qzeng-custom | SNP | tv | map_l100_m2_e1 | hetalt | 82.1918 | 69.7674 | 100.0000 | 88.8476 | 30 | 13 | 30 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l100_m2_e1 | homalt | 87.7555 | 78.7143 | 99.1432 | 62.9833 | 7322 | 1980 | 7290 | 63 | 62 | 98.4127 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | * | 81.4498 | 71.1657 | 95.2082 | 88.9716 | 4719 | 1912 | 4709 | 237 | 201 | 84.8101 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | het | 81.8738 | 72.6880 | 93.7170 | 91.2462 | 3199 | 1202 | 3192 | 214 | 178 | 83.1776 | |
| qzeng-custom | SNP | tv | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 96.6942 | 4 | 5 | 4 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m0_e0 | homalt | 80.6373 | 68.2575 | 98.5026 | 73.5992 | 1516 | 705 | 1513 | 23 | 23 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | * | 84.7104 | 74.9376 | 97.4144 | 82.6672 | 12002 | 4014 | 11981 | 318 | 271 | 85.2201 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | het | 85.2256 | 76.2789 | 96.5500 | 86.2555 | 7724 | 2402 | 7724 | 276 | 229 | 82.9710 | |
| qzeng-custom | SNP | tv | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 89.7959 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m1_e0 | homalt | 83.8172 | 72.6621 | 99.0185 | 65.9234 | 4258 | 1602 | 4237 | 42 | 42 | 100.0000 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | * | 85.0368 | 75.4382 | 97.4343 | 83.5735 | 12439 | 4050 | 12418 | 327 | 274 | 83.7920 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | het | 85.5513 | 76.7765 | 96.5908 | 86.8303 | 8017 | 2425 | 8018 | 283 | 230 | 81.2721 | |
| qzeng-custom | SNP | tv | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 91.1111 | 20 | 10 | 20 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l125_m2_e0 | homalt | 84.1423 | 73.1594 | 99.0054 | 69.1320 | 4402 | 1615 | 4380 | 44 | 44 | 100.0000 | |