PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78501-78550 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 69.6410 | 0.0000 | 0.0000 | 679 | 296 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.1561 | 92.0082 | 72.5938 | 67.9226 | 449 | 39 | 445 | 168 | 63 | 37.5000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 54.5455 | 50.0000 | 60.0000 | 98.9980 | 2 | 2 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8131 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.3827 | 0 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.3679 | 93.1480 | 77.1005 | 68.0245 | 3317 | 244 | 3377 | 1003 | 177 | 17.6471 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.6106 | 97.3432 | 76.4021 | 67.2751 | 1319 | 36 | 2493 | 770 | 121 | 15.7143 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.1623 | 100.0000 | 1102 | 192 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.6642 | 98.2456 | 79.1406 | 70.0215 | 896 | 16 | 884 | 233 | 56 | 24.0343 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.7253 | 89.2979 | 77.0540 | 68.9962 | 4464 | 535 | 4755 | 1416 | 413 | 29.1667 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 84.5148 | 96.2617 | 75.3230 | 67.9780 | 1751 | 68 | 3556 | 1165 | 308 | 26.4378 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 78.3532 | 100.0000 | 1513 | 418 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.8820 | 96.0769 | 82.6897 | 71.8992 | 1200 | 49 | 1199 | 251 | 105 | 41.8327 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 64.0961 | 94.0104 | 48.6239 | 70.6199 | 361 | 23 | 371 | 392 | 15 | 3.8265 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 57.8169 | 95.5224 | 41.4538 | 69.3558 | 192 | 9 | 211 | 298 | 13 | 4.3624 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.6798 | 94.7674 | 62.9921 | 72.8632 | 163 | 9 | 160 | 94 | 2 | 2.1277 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 54.5455 | 50.0000 | 60.0000 | 98.9733 | 2 | 2 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.3711 | 0 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.6869 | 98.0583 | 70.0000 | 59.7641 | 808 | 16 | 812 | 348 | 6 | 1.7241 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 76.8774 | 98.4234 | 63.0705 | 60.7279 | 437 | 7 | 456 | 267 | 5 | 1.8727 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 73.6842 | 0.0000 | 0.0000 | 14 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 89.3363 | 98.8920 | 81.4645 | 58.0614 | 357 | 4 | 356 | 81 | 1 | 1.2346 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.2623 | 98.5801 | 92.1606 | 58.7214 | 486 | 7 | 482 | 41 | 1 | 2.4390 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.1085 | 98.8889 | 89.7690 | 62.4535 | 267 | 3 | 272 | 31 | 1 | 3.2258 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 9 | 3 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.4478 | 99.5261 | 95.4545 | 52.1739 | 210 | 1 | 210 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 74.7354 | 78.9833 | 70.9211 | 58.2978 | 1041 | 277 | 1178 | 483 | 222 | 45.9627 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 79.2418 | 93.0939 | 68.9781 | 57.8721 | 337 | 25 | 945 | 425 | 175 | 41.1765 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 67.5753 | 0.0000 | 0.0000 | 471 | 226 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.7273 | 89.9614 | 80.0687 | 60.1915 | 233 | 26 | 233 | 58 | 47 | 81.0345 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 83.3645 | 86.4174 | 80.5198 | 60.1495 | 2774 | 436 | 3005 | 727 | 352 | 48.4182 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 86.5263 | 95.4338 | 79.1396 | 59.8767 | 836 | 40 | 2318 | 611 | 258 | 42.2259 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 77.3036 | 0.0000 | 0.0000 | 1250 | 367 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 90.4568 | 95.9554 | 85.5542 | 61.1138 | 688 | 29 | 687 | 116 | 94 | 81.0345 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 89.3091 | 91.3606 | 87.3477 | 63.4839 | 1766 | 167 | 1864 | 270 | 137 | 50.7407 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.8091 | 96.9639 | 87.1747 | 63.5912 | 511 | 16 | 1407 | 207 | 89 | 42.9952 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 84.4280 | 0.0000 | 0.0000 | 797 | 147 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.1711 | 99.1342 | 87.8846 | 63.1467 | 458 | 4 | 457 | 63 | 48 | 76.1905 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.1636 | 88.4927 | 76.6793 | 63.1888 | 3599 | 468 | 3847 | 1170 | 372 | 31.7949 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 84.0471 | 96.0902 | 74.6866 | 62.8554 | 1278 | 52 | 2800 | 949 | 275 | 28.9779 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 77.2589 | 0.0000 | 0.0000 | 1274 | 375 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.8795 | 96.2316 | 82.5710 | 64.1403 | 1047 | 41 | 1047 | 221 | 97 | 43.8914 | |