PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78151-78200 / 86044 show all
ndellapenna-hhgaSNPtvmap_l150_m1_e0*
98.9384
98.2221
99.6652
71.6791
10718194107183617
47.2222
ndellapenna-hhgaSNPtvmap_l150_m1_e0het
98.5385
97.5525
99.5446
72.4747
677617067763113
41.9355
ndellapenna-hhgaSNPtvmap_l150_m1_e0hetalt
88.8889
80.0000
100.0000
82.9787
1641600
ndellapenna-hhgaSNPtvmap_l150_m1_e0homalt
99.6826
99.4932
99.8728
70.1019
392620392654
80.0000
ndellapenna-hhgaSNPtvmap_l150_m2_e0*
98.9623
98.2651
99.6695
73.4684
11158197111583717
45.9459
ndellapenna-hhgaSNPtvmap_l150_m2_e0het
98.5727
97.6145
99.5500
73.8403
707917370793213
40.6250
ndellapenna-hhgaSNPtvmap_l150_m2_e0hetalt
88.8889
80.0000
100.0000
85.7143
1641600
ndellapenna-hhgaSNPtvmap_l150_m2_e0homalt
99.6933
99.5102
99.8771
72.6980
406320406354
80.0000
ndellapenna-hhgaSNPtvmap_l150_m2_e1*
98.9668
98.2699
99.6737
73.4886
11303199113033717
45.9459
ndellapenna-hhgaSNPtvmap_l150_m2_e1het
98.5776
97.6184
99.5559
73.8732
717317571733213
40.6250
ndellapenna-hhgaSNPtvmap_l150_m2_e1hetalt
88.8889
80.0000
100.0000
85.8407
1641600
ndellapenna-hhgaSNPtvmap_l150_m2_e1homalt
99.6971
99.5162
99.8786
72.6929
411420411454
80.0000
ndellapenna-hhgaSNPtvmap_l250_m0_e0*
97.2074
95.5556
98.9175
91.4259
7313473184
50.0000
ndellapenna-hhgaSNPtvmap_l250_m0_e0het
96.6071
94.5804
98.7226
91.3140
5413154173
42.8571
ndellapenna-hhgaSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvmap_l250_m0_e0homalt
98.9583
98.4456
99.4764
91.6630
190319011
100.0000
ndellapenna-hhgaSNPtvmap_l250_m1_e0*
97.8332
96.3733
99.3380
86.1787
25519625511710
58.8235
ndellapenna-hhgaSNPtvmap_l250_m1_e0het
97.1755
95.2994
99.1269
86.3845
1703841703158
53.3333
ndellapenna-hhgaSNPtvmap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
95.4545
22200
ndellapenna-hhgaSNPtvmap_l250_m1_e0homalt
99.2958
98.8318
99.7642
85.6708
8461084622
100.0000
ndellapenna-hhgaSNPtvmap_l250_m2_e0*
97.9240
96.5649
99.3219
86.9151
27839927831910
52.6316
ndellapenna-hhgaSNPtvmap_l250_m2_e0het
97.2703
95.5155
99.0909
86.8763
1853871853178
47.0588
ndellapenna-hhgaSNPtvmap_l250_m2_e0hetalt
75.0000
60.0000
100.0000
94.6429
32300
ndellapenna-hhgaSNPtvmap_l250_m2_e0homalt
99.3569
98.9328
99.7847
86.9321
9271092722
100.0000
ndellapenna-hhgaSNPtvmap_l250_m2_e1*
97.9485
96.6049
99.3300
87.0027
28179928171910
52.6316
ndellapenna-hhgaSNPtvmap_l250_m2_e1het
97.3057
95.5725
99.1029
86.9625
1878871878178
47.0588
ndellapenna-hhgaSNPtvmap_l250_m2_e1hetalt
75.0000
60.0000
100.0000
94.6429
32300
ndellapenna-hhgaSNPtvmap_l250_m2_e1homalt
99.3631
98.9429
99.7868
87.0245
9361093622
100.0000
ndellapenna-hhgaSNPtvmap_siren*
99.4997
99.1596
99.8422
55.1910
45544386455447230
41.6667
ndellapenna-hhgaSNPtvmap_sirenhet
99.3169
98.8465
99.7918
55.1017
28279330282795919
32.2034
ndellapenna-hhgaSNPtvmap_sirenhetalt
93.5065
88.8889
98.6301
75.8278
7297211
100.0000
ndellapenna-hhgaSNPtvmap_sirenhomalt
99.8287
99.7274
99.9303
55.1755
1719347171931210
83.3333
ndellapenna-hhgaSNPtvsegdup*
99.4730
99.5546
99.3915
90.2986
84943884945218
34.6154
ndellapenna-hhgaSNPtvsegduphet
99.3381
99.3569
99.3193
90.2972
5253345253362
5.5556
ndellapenna-hhgaSNPtvsegduphetalt
100.0000
100.0000
100.0000
97.7564
70700
ndellapenna-hhgaSNPtvsegduphomalt
99.6917
99.8765
99.5077
90.2309
3234432341616
100.0000
ndellapenna-hhgaSNPtvsegdupwithalt*
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvsegdupwithalthet
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvtech_badpromoters*
96.5986
98.6111
94.6667
54.5455
7117141
25.0000
ndellapenna-hhgaSNPtvtech_badpromotershet
94.1176
96.9697
91.4286
54.5455
3213230
0.0000
ndellapenna-hhgaSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvtech_badpromotershomalt
98.7342
100.0000
97.5000
54.5455
3903911
100.0000
ndellapenna-hhgaSNPtidecoyhetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtidecoyhomalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtifunc_cds*
99.9384
99.9565
99.9202
22.0527
13781613781110
0.0000
ndellapenna-hhgaSNPtifunc_cdshet
99.9118
99.9530
99.8708
22.7256
850048500110
0.0000
ndellapenna-hhgaSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
57.8947
80800
ndellapenna-hhgaSNPtifunc_cdshomalt
99.9810
99.9621
100.0000
20.8377
52732527300