PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
78101-78150 / 86044 show all
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5204
99.2464
99.7960
35.7063
342426342574
57.1429
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.3658
98.9242
99.8113
35.2869
211523211641
25.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.7712
99.7712
99.7712
36.2974
13083130833
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.0392
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
97.5000
10100
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNPtvmap_l100_m0_e0*
98.9920
98.3490
99.6435
65.9868
10901183109013917
43.5897
ndellapenna-hhgaSNPtvmap_l100_m0_e0het
98.6590
97.7984
99.5349
67.9349
706315970633313
39.3939
ndellapenna-hhgaSNPtvmap_l100_m0_e0hetalt
90.3226
87.5000
93.3333
79.1667
1421411
100.0000
ndellapenna-hhgaSNPtvmap_l100_m0_e0homalt
99.6482
99.4280
99.8694
61.5639
382422382453
60.0000
ndellapenna-hhgaSNPtvmap_l100_m1_e0*
99.2885
98.8123
99.7692
62.3765
24210291242105624
42.8571
ndellapenna-hhgaSNPtvmap_l100_m1_e0het
99.0304
98.3784
99.6911
62.9947
15167250151674717
36.1702
ndellapenna-hhgaSNPtvmap_l100_m1_e0hetalt
90.9091
85.3659
97.2222
77.7778
3563511
100.0000
ndellapenna-hhgaSNPtvmap_l100_m1_e0homalt
99.7619
99.6130
99.9113
61.1747
900835900886
75.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e0*
99.2917
98.8335
99.7541
64.3936
24741292247416124
39.3443
ndellapenna-hhgaSNPtvmap_l100_m2_e0het
99.0369
98.4154
99.6662
64.6823
15527250155275217
32.6923
ndellapenna-hhgaSNPtvmap_l100_m2_e0hetalt
91.1392
85.7143
97.2973
79.7814
3663611
100.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e0homalt
99.7609
99.6093
99.9129
63.7805
917836917886
75.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e1*
99.2907
98.8332
99.7525
64.4232
24988295249886224
38.7097
ndellapenna-hhgaSNPtvmap_l100_m2_e1het
99.0340
98.4126
99.6632
64.7264
15685253156855317
32.0755
ndellapenna-hhgaSNPtvmap_l100_m2_e1hetalt
91.3580
86.0465
97.3684
79.4595
3763711
100.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e1homalt
99.7631
99.6130
99.9137
63.7862
926636926686
75.0000
ndellapenna-hhgaSNPtvmap_l125_m0_e0*
98.6916
97.8284
99.5702
72.2163
648714464872813
46.4286
ndellapenna-hhgaSNPtvmap_l125_m0_e0het
98.2879
97.1825
99.4189
73.8528
427712442772511
44.0000
ndellapenna-hhgaSNPtvmap_l125_m0_e0hetalt
87.5000
77.7778
100.0000
86.5385
72700
ndellapenna-hhgaSNPtvmap_l125_m0_e0homalt
99.5256
99.1896
99.8640
68.2316
220318220332
66.6667
ndellapenna-hhgaSNPtvmap_l125_m1_e0*
99.1238
98.5327
99.7220
67.2834
15781235157814422
50.0000
ndellapenna-hhgaSNPtvmap_l125_m1_e0het
98.8001
97.9854
99.6285
68.0340
992220499223716
43.2432
ndellapenna-hhgaSNPtvmap_l125_m1_e0hetalt
90.9091
83.3333
100.0000
79.1667
2552500
ndellapenna-hhgaSNPtvmap_l125_m1_e0homalt
99.7180
99.5563
99.8802
65.8321
583426583476
85.7143
ndellapenna-hhgaSNPtvmap_l125_m2_e0*
99.1430
98.5687
99.7239
69.3029
16253236162534522
48.8889
ndellapenna-hhgaSNPtvmap_l125_m2_e0het
98.8271
98.0368
99.6302
69.6751
10237205102373816
42.1053
ndellapenna-hhgaSNPtvmap_l125_m2_e0hetalt
90.9091
83.3333
100.0000
82.3944
2552500
ndellapenna-hhgaSNPtvmap_l125_m2_e0homalt
99.7253
99.5679
99.8833
68.5442
599126599176
85.7143
ndellapenna-hhgaSNPtvmap_l125_m2_e1*
99.1365
98.5592
99.7206
69.3660
16417240164174622
47.8261
ndellapenna-hhgaSNPtvmap_l125_m2_e1het
98.8154
98.0195
99.6244
69.7483
10344209103443916
41.0256
ndellapenna-hhgaSNPtvmap_l125_m2_e1hetalt
90.9091
83.3333
100.0000
82.5175
2552500
ndellapenna-hhgaSNPtvmap_l125_m2_e1homalt
99.7279
99.5719
99.8844
68.5879
604826604876
85.7143
ndellapenna-hhgaSNPtvmap_l150_m0_e0*
98.3535
97.3167
99.4126
77.2836
406211240622411
45.8333
ndellapenna-hhgaSNPtvmap_l150_m0_e0het
97.8428
96.5178
99.2046
78.4007
27449927442210
45.4545
ndellapenna-hhgaSNPtvmap_l150_m0_e0hetalt
100.0000
100.0000
100.0000
93.1818
30300
ndellapenna-hhgaSNPtvmap_l150_m0_e0homalt
99.4329
99.0211
99.8481
74.3625
131513131521
50.0000