PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
78001-78050 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 94.3396 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 80.0000 | 76.9231 | 83.3333 | 90.6977 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 83.3333 | 83.3333 | 83.3333 | 89.0909 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 80.0000 | 76.9231 | 83.3333 | 90.8397 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 83.3333 | 83.3333 | 83.3333 | 89.2857 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 50.0000 | 40.0000 | 66.6667 | 95.6522 | 2 | 3 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | * | 72.7273 | 66.6667 | 80.0000 | 91.2281 | 4 | 2 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 66.6667 | 66.6667 | 92.3077 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 1 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 89.9225 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.0000 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 91.4474 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 91.2621 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.2222 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | * | 78.5714 | 73.3333 | 84.6154 | 91.5584 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 91.4286 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.9231 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 97.2222 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 88.3721 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 88.8889 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.8889 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.0000 | 1 | 2 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.9147 | 98.8772 | 98.9521 | 56.9032 | 1321 | 15 | 1322 | 14 | 5 | 35.7143 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.6549 | 98.5965 | 98.7135 | 57.7151 | 843 | 12 | 844 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.3763 | 99.3763 | 99.3763 | 54.9625 | 478 | 3 | 478 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3092 | 99.1720 | 99.4467 | 63.8078 | 2156 | 18 | 2157 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2048 | 98.9185 | 99.4928 | 63.7700 | 1372 | 15 | 1373 | 7 | 2 | 28.5714 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4917 | 99.6183 | 99.3655 | 63.7701 | 783 | 3 | 783 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4429 | 99.1667 | 99.7207 | 68.4651 | 1428 | 12 | 1428 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3407 | 98.9059 | 99.7792 | 68.3217 | 904 | 10 | 904 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6190 | 99.6190 | 99.6190 | 68.6754 | 523 | 2 | 523 | 2 | 1 | 50.0000 | |