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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77301-77350 / 86044 show all
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
92.7491
96.2553
89.4894
50.3947
26991052699317129
40.6940
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
78.2874
71.9726
85.8170
51.6431
79763106812013421151
85.7675
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
86.0468
96.6402
77.5463
56.5992
3164110372310781046
97.0315
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
62.9939
46.2118
98.9156
35.8827
2513292520982320
86.9565
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.6456
97.0042
90.5118
51.1256
229971229924185
35.2697
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.5723
72.6344
85.5675
52.9869
1073940461090918401594
86.6304
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
85.6750
96.3113
77.1544
58.1338
4282164497814741427
96.8114
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
64.0965
47.4352
98.7989
37.2929
3403377128793530
85.7143
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
93.2488
96.4929
90.2158
52.0822
30541113052331137
41.3897
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
80.0676
74.4893
86.5491
57.6750
1316345081334520741774
85.5352
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
86.8526
95.8946
79.3688
62.7255
5606240636316541576
95.2842
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
65.1217
48.6537
98.4416
40.4065
3921413833485340
75.4717
ndellapenna-hhgaINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.6003
96.5481
90.8273
56.5817
36361303634367158
43.0518
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
77.1982
70.9029
84.7203
46.8070
67062752683112321026
83.2792
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
84.9281
95.2067
76.6525
51.6405
26021313073936904
96.5812
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
63.3251
46.6890
98.3795
37.6873
2228254418823128
90.3226
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
91.6463
96.0573
87.6226
43.6282
187677187626594
35.4717
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
60.3133
55.2921
66.3376
42.9617
653528672341312
91.4956
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
57.8720
92.5676
42.0945
50.6085
13711205282275
97.5177
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
60.5363
43.5780
99.1018
34.3811
38049233132
66.6667
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
77.0538
84.4720
70.8333
31.6726
136251365635
62.5000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
92.9356
91.3534
94.5736
81.3987
243232441411
78.5714
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
95.5453
96.1290
94.9686
82.4503
149615186
75.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
69.8835
56.7568
90.9091
61.4035
21162022
100.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
96.6887
98.6486
94.8052
81.8396
7317343
75.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
73.2143
71.9298
74.5455
99.3650
411641146
42.8571
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
77.5000
73.8095
81.5789
99.3308
31113173
42.8571
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
53.3333
44.4444
66.6667
98.8235
45420
0.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
70.5882
100.0000
54.5455
99.5554
60653
60.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
87.6160
82.5603
93.3313
53.0320
30446433065219187
85.3881
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
93.5778
96.7372
90.6183
55.9107
1601541700176163
92.6136
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
67.3819
51.3536
97.9554
43.6649
607575527115
45.4545
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
97.3268
98.3529
96.3218
51.1785
836148383219
59.3750
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
81.6400
76.3498
87.7178
52.8542
10043111007141123
87.2340
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
82.1422
93.3333
73.3475
65.0261
30822344125113
90.4000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
77.9566
64.5649
98.3573
34.9800
51228147984
50.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
95.8333
95.8333
95.8333
44.3478
184818486
75.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
87.5209
83.4104
92.0575
35.5502
14432871472127115
90.5512
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
92.0843
97.2973
87.4016
37.3944
68419777112107
95.5357
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
70.4512
54.9658
98.0843
26.8908
32126325654
80.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
98.3190
98.8713
97.7728
36.2216
4385439104
40.0000
ndellapenna-hhgaINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
70.8955
66.9014
75.3968
42.7273
9547953129
93.5484