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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
77101-77150 / 86044 show all
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
95.0800
95.1730
94.9873
39.7320
48702474870257123
47.8599
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5727
82.8140
84.3455
36.4989
1512131381519428202630
93.2624
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.6741
97.8739
73.0725
38.0893
6537142694725602496
97.5000
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
74.2193
59.3086
99.1453
28.8754
4049277837123227
84.3750
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
95.3132
95.4134
95.2131
38.5261
45352184535228107
46.9298
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.9138
82.9573
84.8926
46.2434
1845837921853832993068
92.9979
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
84.3874
97.5345
74.3636
48.4035
8189207867629912903
97.0578
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
74.1810
59.3050
99.0185
33.0396
4847332644394437
84.0909
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
95.3994
95.4409
95.3578
49.7393
54222595423264128
48.4848
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.9809
86.1182
87.8610
55.6334
2704843602713537493406
90.8509
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.1349
97.1942
80.6205
57.4187
133713861390333423177
95.0628
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
75.1664
60.6286
98.8753
39.2261
5633365851875947
79.6610
ndellapenna-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.0365
96.2201
95.8537
59.0186
80443168045348182
52.2989
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
88.1593
87.4776
88.8518
37.5644
2146730732155127042453
90.7175
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
89.0249
97.7996
81.6952
39.8894
101782291056423672280
96.3245
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
76.6168
62.5327
98.8894
32.4892
4306258040074540
88.8889
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
96.1705
96.3571
95.9846
35.8391
69832646980292133
45.5479
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
63.1468
57.9627
69.3493
39.7938
404293405179173
96.6480
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
61.1681
90.3704
46.2295
44.2413
12213141164161
98.1707
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
62.6589
45.8248
99.0431
30.1003
22526620721
50.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
80.8511
80.2817
81.4286
43.5484
5714571311
84.6154
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5852
99.4085
99.7626
54.0647
25209150252096050
83.3333
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.5687
99.2552
99.8842
53.3003
14660110146641712
70.5882
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
96.4104
94.8905
97.9798
71.8750
3902138888
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7349
99.8133
99.6566
54.0176
1015919101573530
85.7143
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
50.0000
100.0000
33.3333
99.9972
10120
0.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
50.0000
100.0000
33.3333
99.9731
10120
0.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
94.7857
94.3579
95.2175
45.4647
1120567011209563510
90.5861
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
95.4402
98.1388
92.8860
44.9639
65911256659510472
92.5490
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
79.5169
66.3764
99.1444
42.1411
99150292785
62.5000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
98.8001
98.8271
98.7732
47.1774
36234336234533
73.3333
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
82.5967
81.0065
84.2506
51.7959
998234995186167
89.7849
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
79.3320
92.4675
69.4643
60.8392
35629389171153
89.4737
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.5245
69.8462
97.8923
31.4607
45419641898
88.8889
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
96.1637
95.4315
96.9072
51.1335
188918866
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
95.3412
95.1435
95.5397
38.5245
38791983877181170
93.9227
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
95.9629
98.6871
93.3851
38.4673
2255302287162154
95.0617
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
78.4355
65.1515
98.5240
37.7011
30116126743
75.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.1754
99.4737
98.8789
38.7923
1323713231513
86.6667
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
76.3362
74.6667
78.0822
54.3750
5619571614
87.5000