PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76601-76650 / 86044 show all
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
85.7143
80.0000
92.3077
92.6966
1231211
100.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7610
99.6391
99.8833
55.2713
1711562171162015
75.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7605
99.6030
99.9185
55.4188
11040441104096
66.6667
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
73.6842
50500
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7617
99.7043
99.8191
54.9748
6070186071119
81.8182
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2994
98.9826
99.6182
37.5156
17998185180046946
66.6667
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.2051
98.7842
99.6296
37.6999
11294139112964220
47.6190
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
62.5000
50511
100.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4656
99.3180
99.6136
37.1650
66994667032625
96.1538
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_51to200*
81.4251
70.6294
96.1165
91.5574
101429943
75.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_51to200het
79.5193
68.6275
94.5205
91.5704
70326943
75.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
86.1111
75.6098
100.0000
91.5254
31103000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.6457
99.4290
99.8635
32.0123
7313427315104
40.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.5327
99.1984
99.8692
31.8675
457937458061
16.6667
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
75.0000
10100
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8356
99.8174
99.8539
32.2109
27335273443
75.0000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200*
87.5000
77.7778
100.0000
96.2733
72600
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200het
92.3077
85.7143
100.0000
96.0630
61500
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
97.0588
11100
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNP*lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaSNP*map_l100_m0_e0*
99.0308
98.3192
99.7529
65.5554
32289552322908041
51.2500
ndellapenna-hhgaSNP*map_l100_m0_e0het
98.6808
97.7128
99.6681
67.9602
20720485207216932
46.3768
ndellapenna-hhgaSNP*map_l100_m0_e0hetalt
90.3226
87.5000
93.3333
79.1667
1421411
100.0000
ndellapenna-hhgaSNP*map_l100_m0_e0homalt
99.6765
99.4406
99.9135
60.1441
115556511555108
80.0000
ndellapenna-hhgaSNP*map_l100_m1_e0*
99.3352
98.8536
99.8215
61.7229
715738307157512861
47.6562
ndellapenna-hhgaSNP*map_l100_m1_e0het
99.0732
98.3928
99.7631
62.7556
446307294463210641
38.6792
ndellapenna-hhgaSNP*map_l100_m1_e0hetalt
90.9091
85.3659
97.2222
77.7778
3563511
100.0000
ndellapenna-hhgaSNP*map_l100_m1_e0homalt
99.7849
99.6482
99.9220
59.8338
2690895269082119
90.4762
ndellapenna-hhgaSNP*map_l100_m2_e0*
99.3385
98.8697
99.8117
63.7221
731288367313013863
45.6522
ndellapenna-hhgaSNP*map_l100_m2_e0het
99.0800
98.4181
99.7510
64.4052
456657344566711441
35.9649
ndellapenna-hhgaSNP*map_l100_m2_e0hetalt
91.1392
85.7143
97.2973
79.7814
3663611
100.0000
ndellapenna-hhgaSNP*map_l100_m2_e0homalt
99.7835
99.6512
99.9162
62.4810
2742796274272321
91.3043
ndellapenna-hhgaSNP*map_l100_m2_e1*
99.3413
98.8761
99.8109
63.7314
738978407389914063
45.0000
ndellapenna-hhgaSNP*map_l100_m2_e1het
99.0834
98.4264
99.7493
64.4229
461607384616211641
35.3448
ndellapenna-hhgaSNP*map_l100_m2_e1hetalt
91.3580
86.0465
97.3684
79.4595
3763711
100.0000
ndellapenna-hhgaSNP*map_l100_m2_e1homalt
99.7857
99.6546
99.9170
62.4746
2770096277002321
91.3043
ndellapenna-hhgaSNP*map_l125_m0_e0*
98.7976
97.9108
99.7006
72.0168
18980405189805729
50.8772