PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75851-75900 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 84.2914 | 83.4336 | 85.1671 | 70.9828 | 31623 | 6279 | 32286 | 5623 | 5042 | 89.6674 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 85.0606 | 95.7652 | 76.5084 | 52.6827 | 13998 | 619 | 15343 | 4711 | 4543 | 96.4339 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 76.2491 | 62.1404 | 98.6463 | 36.1300 | 8553 | 5211 | 7870 | 108 | 94 | 87.0370 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.5407 | 95.2841 | 91.8599 | 48.3177 | 9072 | 449 | 9073 | 804 | 405 | 50.3731 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 85.3685 | 84.7087 | 86.0387 | 70.3107 | 27100 | 4892 | 27621 | 4482 | 4002 | 89.2905 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 86.0688 | 96.6376 | 77.5838 | 51.2369 | 12100 | 421 | 13152 | 3800 | 3663 | 96.3947 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 76.9320 | 62.9626 | 98.8676 | 34.9557 | 6992 | 4113 | 6461 | 74 | 65 | 87.8378 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.3116 | 95.7208 | 92.9434 | 47.3511 | 8008 | 358 | 8008 | 608 | 274 | 45.0658 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.7255 | 84.9037 | 86.5634 | 80.2326 | 36793 | 6542 | 37456 | 5814 | 5159 | 88.7341 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 86.7164 | 95.8976 | 79.1397 | 59.1322 | 17088 | 731 | 18434 | 4859 | 4632 | 95.3283 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 76.5549 | 62.5570 | 98.6231 | 39.2209 | 8778 | 5254 | 8094 | 113 | 98 | 86.7257 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.9839 | 95.1498 | 92.8462 | 56.1753 | 10927 | 557 | 10928 | 842 | 429 | 50.9501 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 88.6086 | 87.8487 | 89.3817 | 86.9060 | 57410 | 7941 | 58141 | 6907 | 5920 | 85.7101 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.7592 | 95.7940 | 84.4397 | 65.4433 | 29198 | 1282 | 30682 | 5654 | 5190 | 91.7934 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 78.1075 | 64.7471 | 98.4152 | 46.2255 | 10816 | 5889 | 10060 | 162 | 132 | 81.4815 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.7319 | 87.1393 | 88.3326 | 67.8909 | 31886 | 4706 | 32320 | 4269 | 3693 | 86.5074 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.8266 | 96.5799 | 82.2256 | 51.6201 | 15221 | 539 | 16108 | 3482 | 3306 | 94.9454 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.6408 | 64.0764 | 98.4903 | 40.8685 | 6712 | 3763 | 6263 | 96 | 86 | 89.5833 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.7847 | 96.0993 | 93.5056 | 43.8048 | 9953 | 404 | 9949 | 691 | 301 | 43.5601 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.5816 | 61.9705 | 67.4224 | 73.1294 | 1302 | 799 | 1368 | 661 | 606 | 91.6793 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.6355 | 82.0408 | 50.6542 | 55.8581 | 402 | 88 | 542 | 528 | 513 | 97.1591 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.4096 | 46.8051 | 98.2726 | 36.6180 | 586 | 666 | 512 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.7955 | 87.4652 | 71.6895 | 43.9898 | 314 | 45 | 314 | 124 | 87 | 70.1613 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4308 | 99.2074 | 99.6552 | 61.9169 | 28036 | 224 | 28038 | 97 | 74 | 76.2887 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.4473 | 99.1113 | 99.7856 | 56.2027 | 16283 | 146 | 16290 | 35 | 23 | 65.7143 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1923 | 92.5234 | 98.0198 | 73.2238 | 495 | 40 | 495 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6018 | 99.6636 | 99.5400 | 55.7604 | 11258 | 38 | 11253 | 52 | 41 | 78.8462 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.3948 | 71.7742 | 81.6514 | 99.9459 | 89 | 35 | 89 | 20 | 12 | 60.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.7070 | 70.1149 | 87.1429 | 99.8944 | 61 | 26 | 61 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.9089 | 9 | 7 | 9 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 77.5510 | 90.4762 | 67.8571 | 99.9391 | 19 | 2 | 19 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.5490 | 94.0187 | 95.0853 | 75.2577 | 18674 | 1188 | 18786 | 971 | 814 | 83.8311 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.1353 | 97.1012 | 93.2475 | 55.2934 | 10786 | 322 | 11006 | 797 | 695 | 87.2020 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 82.7487 | 71.4392 | 98.3125 | 49.4079 | 1916 | 766 | 1806 | 31 | 20 | 64.5161 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.0065 | 98.3531 | 97.6623 | 53.6204 | 5972 | 100 | 5974 | 143 | 99 | 69.2308 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.5594 | 82.2599 | 84.9006 | 82.0181 | 2184 | 471 | 2221 | 395 | 339 | 85.8228 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.2926 | 90.9091 | 73.5160 | 70.9163 | 880 | 88 | 966 | 348 | 303 | 87.0690 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.6253 | 69.8745 | 98.1273 | 41.9144 | 835 | 360 | 786 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.4612 | 95.3252 | 93.6128 | 55.7029 | 469 | 23 | 469 | 32 | 25 | 78.1250 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||