PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75801-75850 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l150_m0_e0 | homalt | 52.6207 | 43.4581 | 66.6792 | 59.8524 | 1777 | 2312 | 1777 | 888 | 815 | 91.7793 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | * | 56.5558 | 42.3405 | 85.1406 | 61.3631 | 12960 | 17649 | 12955 | 2261 | 1991 | 88.0584 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | het | 54.1179 | 37.3680 | 98.0827 | 65.3701 | 7218 | 12098 | 7213 | 141 | 5 | 3.5461 | |
| mlin-fermikit | SNP | * | map_l150_m1_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 68.4211 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m1_e0 | homalt | 59.9718 | 50.8826 | 73.0143 | 56.6613 | 5736 | 5537 | 5736 | 2120 | 1986 | 93.6792 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | * | 57.7918 | 43.6268 | 85.5779 | 66.0006 | 13896 | 17956 | 13891 | 2341 | 2055 | 87.7830 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | het | 55.5672 | 38.7672 | 98.0639 | 69.9736 | 7805 | 12328 | 7800 | 154 | 5 | 3.2468 | |
| mlin-fermikit | SNP | * | map_l150_m2_e0 | hetalt | 46.1538 | 30.0000 | 100.0000 | 73.9130 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m2_e0 | homalt | 60.9384 | 52.0130 | 73.5614 | 61.0344 | 6085 | 5614 | 6085 | 2187 | 2050 | 93.7357 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | * | 57.9744 | 43.8280 | 85.6051 | 66.1929 | 14117 | 18093 | 14112 | 2373 | 2083 | 87.7792 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | het | 55.7873 | 38.9825 | 98.0593 | 70.1751 | 7938 | 12425 | 7933 | 157 | 5 | 3.1847 | |
| mlin-fermikit | SNP | * | map_l150_m2_e1 | hetalt | 46.1538 | 30.0000 | 100.0000 | 75.0000 | 6 | 14 | 6 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l150_m2_e1 | homalt | 61.0704 | 52.1941 | 73.5845 | 61.1854 | 6173 | 5654 | 6173 | 2216 | 2078 | 93.7726 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | * | 40.4330 | 27.1194 | 79.4239 | 82.2628 | 579 | 1556 | 579 | 150 | 132 | 88.0000 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | het | 35.3963 | 21.6467 | 97.0238 | 84.3210 | 326 | 1180 | 326 | 10 | 1 | 10.0000 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l250_m0_e0 | homalt | 49.5108 | 40.2226 | 64.3766 | 80.0000 | 253 | 376 | 253 | 140 | 131 | 93.5714 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | * | 45.7291 | 31.7641 | 81.6080 | 76.7628 | 2294 | 4928 | 2294 | 517 | 446 | 86.2669 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | het | 41.8044 | 26.6036 | 97.5328 | 80.1621 | 1265 | 3490 | 1265 | 32 | 1 | 3.1250 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | * | map_l250_m1_e0 | homalt | 51.7475 | 41.7783 | 67.9657 | 72.7453 | 1029 | 1434 | 1029 | 485 | 445 | 91.7526 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | * | 47.3085 | 33.2150 | 82.1776 | 79.9585 | 2619 | 5266 | 2619 | 568 | 495 | 87.1479 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | het | 43.6369 | 28.0901 | 97.7227 | 83.2153 | 1459 | 3735 | 1459 | 34 | 1 | 2.9412 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 88.6086 | 87.8487 | 89.3817 | 86.9060 | 57410 | 7941 | 58141 | 6907 | 5920 | 85.7101 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 89.7592 | 95.7940 | 84.4397 | 65.4433 | 29198 | 1282 | 30682 | 5654 | 5190 | 91.7934 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 78.1075 | 64.7471 | 98.4152 | 46.2255 | 10816 | 5889 | 10060 | 162 | 132 | 81.4815 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.9231 | 95.7613 | 94.0995 | 63.0798 | 17396 | 770 | 17399 | 1091 | 598 | 54.8121 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.4522 | 91.6512 | 93.2674 | 90.5520 | 1976 | 180 | 1981 | 143 | 93 | 65.0350 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.8232 | 94.3471 | 91.3476 | 73.3415 | 1185 | 71 | 1193 | 113 | 71 | 62.8319 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.6804 | 77.2455 | 96.1832 | 69.2488 | 129 | 38 | 126 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.2394 | 90.3138 | 96.3610 | 69.7623 | 662 | 71 | 662 | 25 | 18 | 72.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 87.6827 | 82.3529 | 93.7500 | 99.9627 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 96.0000 | 100.0000 | 92.3077 | 99.3970 | 10 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.8506 | 2 | 1 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8190 | 2 | 2 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.6400 | 96.0539 | 97.2332 | 85.1791 | 4917 | 202 | 4920 | 140 | 101 | 72.1429 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.9297 | 97.2667 | 96.5950 | 72.0063 | 2918 | 82 | 2922 | 103 | 77 | 74.7573 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.9908 | 86.2661 | 98.5294 | 74.4040 | 201 | 32 | 201 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.7182 | 95.3340 | 98.1431 | 70.1548 | 1798 | 88 | 1797 | 34 | 22 | 64.7059 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1272 | 97.5987 | 98.6615 | 84.6994 | 3536 | 87 | 3538 | 48 | 30 | 62.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.2899 | 98.0823 | 98.4984 | 72.4641 | 2097 | 41 | 2099 | 32 | 22 | 68.7500 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.8617 | 90.9091 | 99.1736 | 77.2556 | 120 | 12 | 120 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.1764 | 97.4871 | 98.8756 | 71.7313 | 1319 | 34 | 1319 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 78.4414 | 76.5741 | 80.4020 | 77.5023 | 4658 | 1425 | 4800 | 1170 | 1056 | 90.2564 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 79.2669 | 90.1745 | 70.7134 | 62.8847 | 1964 | 214 | 2260 | 936 | 894 | 95.5128 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.6158 | 59.0525 | 97.7135 | 42.8517 | 1608 | 1115 | 1453 | 34 | 29 | 85.2941 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.0130 | 91.8782 | 84.4600 | 56.4024 | 1086 | 96 | 1087 | 200 | 133 | 66.5000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 99.5739 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.9697 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |