PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75401-75450 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | homalt | 65.3465 | 57.8947 | 75.0000 | 76.9029 | 66 | 48 | 66 | 22 | 21 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | * | 66.7171 | 53.1325 | 89.6341 | 77.6871 | 441 | 389 | 441 | 51 | 46 | 90.1961 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | het | 63.4349 | 47.1193 | 97.0339 | 78.6038 | 229 | 257 | 229 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 78.5714 | 64.7059 | 100.0000 | 88.1720 | 11 | 6 | 11 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m1_e0 | homalt | 70.2797 | 61.4679 | 82.0408 | 75.7185 | 201 | 126 | 201 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | * | 67.2515 | 53.6756 | 90.0196 | 80.9186 | 460 | 397 | 460 | 51 | 46 | 90.1961 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | het | 63.7838 | 47.4849 | 97.1193 | 82.2238 | 236 | 261 | 236 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.6552 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e0 | homalt | 71.0218 | 62.1701 | 82.8125 | 78.5774 | 212 | 129 | 212 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | * | 67.6724 | 54.1379 | 90.2299 | 81.0664 | 471 | 399 | 471 | 51 | 46 | 90.1961 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | het | 64.4737 | 48.2283 | 97.2222 | 82.1403 | 245 | 263 | 245 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 77.4194 | 63.1579 | 100.0000 | 89.9160 | 12 | 7 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l125_m2_e1 | homalt | 71.2146 | 62.3907 | 82.9457 | 78.9731 | 214 | 129 | 214 | 44 | 42 | 95.4545 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | * | 50.5929 | 36.3636 | 83.1169 | 85.4717 | 64 | 112 | 64 | 13 | 11 | 84.6154 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | het | 43.7956 | 28.3019 | 96.7742 | 87.6984 | 30 | 76 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | homalt | 60.1770 | 50.7463 | 73.9130 | 82.8358 | 34 | 33 | 34 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | * | 61.2987 | 46.6403 | 89.3939 | 82.1138 | 236 | 270 | 236 | 28 | 25 | 89.2857 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | het | 58.8785 | 42.1405 | 97.6744 | 82.3529 | 126 | 173 | 126 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 94.5455 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | homalt | 64.8485 | 54.0404 | 81.0606 | 80.8696 | 107 | 91 | 107 | 25 | 23 | 92.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | * | 61.4412 | 46.8208 | 89.3382 | 85.2734 | 243 | 276 | 243 | 29 | 25 | 86.2069 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | het | 59.3258 | 42.7184 | 97.0588 | 85.5779 | 132 | 177 | 132 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 95.7143 | 3 | 6 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | homalt | 64.6707 | 53.7313 | 81.2030 | 84.0528 | 108 | 93 | 108 | 25 | 23 | 92.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | * | 61.8989 | 47.2693 | 89.6429 | 85.3403 | 251 | 280 | 251 | 29 | 25 | 86.2069 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | het | 59.5186 | 42.9022 | 97.1429 | 85.6704 | 136 | 181 | 136 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 57.1429 | 40.0000 | 100.0000 | 94.5946 | 4 | 6 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | homalt | 65.2941 | 54.4118 | 81.6176 | 84.1676 | 111 | 93 | 111 | 25 | 23 | 92.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | * | 42.4242 | 29.1667 | 77.7778 | 95.4315 | 7 | 17 | 7 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | het | 31.5789 | 20.0000 | 75.0000 | 95.5556 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | homalt | 57.1429 | 44.4444 | 80.0000 | 95.0495 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | * | 49.3151 | 33.9623 | 90.0000 | 92.9701 | 36 | 70 | 36 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | het | 47.5000 | 31.6667 | 95.0000 | 92.8826 | 19 | 41 | 19 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | homalt | 53.1250 | 38.6364 | 85.0000 | 92.5094 | 17 | 27 | 17 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | het | 49.4382 | 33.3333 | 95.6522 | 93.9314 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | het | 49.4382 | 33.3333 | 95.6522 | 94.1176 | 22 | 44 | 22 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | homalt | 55.8824 | 41.3043 | 86.3636 | 93.6599 | 19 | 27 | 19 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | * | 83.5106 | 74.6755 | 94.7168 | 75.2199 | 2244 | 761 | 2241 | 125 | 111 | 88.8000 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | het | 82.5666 | 72.2784 | 96.2698 | 75.1037 | 1215 | 466 | 1213 | 47 | 36 | 76.5957 | |
| mlin-fermikit | INDEL | I1_5 | map_siren | hetalt | 82.7225 | 70.5357 | 100.0000 | 83.1169 | 79 | 33 | 78 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_siren | homalt | 84.8214 | 78.3828 | 92.4125 | 74.4596 | 950 | 262 | 950 | 78 | 75 | 96.1538 | |