PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75351-75400 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 75.0000 | 4 | 11 | 4 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l150_m2_e1 | homalt | 61.4051 | 51.5794 | 75.8555 | 61.5254 | 3968 | 3725 | 3968 | 1263 | 1193 | 94.4576 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | * | 41.9162 | 28.1022 | 82.4411 | 81.5488 | 385 | 985 | 385 | 82 | 72 | 87.8049 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | het | 36.6957 | 22.5910 | 97.6852 | 83.7594 | 211 | 723 | 211 | 5 | 1 | 20.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | homalt | 50.6550 | 39.9083 | 69.3227 | 79.0659 | 174 | 262 | 174 | 77 | 71 | 92.2078 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | * | 47.0199 | 32.5617 | 84.5718 | 76.5901 | 1491 | 3088 | 1491 | 272 | 230 | 84.5588 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | het | 42.7481 | 27.3585 | 97.7136 | 79.5371 | 812 | 2156 | 812 | 19 | 1 | 5.2632 | |
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m1_e0 | homalt | 53.4856 | 42.2526 | 72.8541 | 73.1257 | 679 | 928 | 679 | 253 | 229 | 90.5138 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | * | 48.4805 | 33.9257 | 84.9075 | 79.7858 | 1699 | 3309 | 1699 | 302 | 258 | 85.4305 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | het | 44.6395 | 28.9183 | 97.8170 | 82.5282 | 941 | 2313 | 941 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m2_e0 | homalt | 54.3759 | 43.3391 | 72.9548 | 76.3218 | 758 | 991 | 758 | 281 | 257 | 91.4591 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | * | 48.6646 | 34.1017 | 84.9362 | 80.0607 | 1731 | 3345 | 1731 | 307 | 262 | 85.3420 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | het | 44.9323 | 29.1604 | 97.8637 | 82.7453 | 962 | 2337 | 962 | 21 | 1 | 4.7619 | |
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | map_l250_m2_e1 | homalt | 54.4040 | 43.3973 | 72.8910 | 76.6541 | 769 | 1003 | 769 | 286 | 261 | 91.2587 | |
| mlin-fermikit | SNP | ti | map_siren | * | 84.2869 | 75.7361 | 95.0143 | 45.5372 | 76005 | 24350 | 76001 | 3988 | 3501 | 87.7884 | |
| mlin-fermikit | SNP | ti | map_siren | het | 83.4382 | 72.0464 | 99.1091 | 46.3223 | 44944 | 17438 | 44944 | 404 | 15 | 3.7129 | |
| mlin-fermikit | SNP | ti | map_siren | hetalt | 71.9101 | 56.1404 | 100.0000 | 66.6667 | 32 | 25 | 32 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_siren | homalt | 85.5625 | 81.8362 | 89.6443 | 44.4398 | 31029 | 6887 | 31025 | 3584 | 3486 | 97.2656 | |
| mlin-fermikit | SNP | ti | segdup | * | 98.0976 | 97.5329 | 98.6689 | 85.0585 | 19055 | 482 | 19051 | 257 | 86 | 33.4630 | |
| mlin-fermikit | SNP | ti | segdup | het | 97.7090 | 96.7914 | 98.6442 | 84.9489 | 11644 | 386 | 11641 | 160 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7213 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | segdup | homalt | 98.7142 | 98.7209 | 98.7075 | 85.2139 | 7409 | 96 | 7408 | 97 | 86 | 88.6598 | |
| mlin-fermikit | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 40.7143 | 79 | 6 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | het | 92.6829 | 86.3636 | 100.0000 | 41.5385 | 38 | 6 | 38 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | tv | * | * | 98.7665 | 98.1308 | 99.4104 | 19.3147 | 951572 | 18126 | 951506 | 5643 | 4116 | 72.9399 | |
| mlin-fermikit | SNP | tv | * | het | 98.7020 | 97.6537 | 99.7731 | 18.7114 | 577821 | 13883 | 577760 | 1314 | 14 | 1.0655 | |
| mlin-fermikit | SNP | tv | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | tv | * | homalt | 98.8702 | 98.8876 | 98.8528 | 20.1908 | 372928 | 4195 | 372923 | 4328 | 4101 | 94.7551 | |
| mlin-fermikit | SNP | tv | HG002complexvar | * | 98.1368 | 97.0653 | 99.2323 | 22.0366 | 238931 | 7224 | 238861 | 1848 | 1739 | 94.1017 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | * | 72.7673 | 60.4532 | 91.3812 | 78.4780 | 827 | 541 | 827 | 78 | 68 | 87.1795 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | het | 71.6654 | 57.2509 | 95.7806 | 78.7349 | 454 | 339 | 454 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 64.6154 | 47.7273 | 100.0000 | 87.8613 | 21 | 23 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | homalt | 74.8140 | 66.2900 | 85.8537 | 77.2601 | 352 | 179 | 352 | 58 | 56 | 96.5517 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | * | 72.9543 | 60.7168 | 91.3700 | 78.5863 | 847 | 548 | 847 | 80 | 69 | 86.2500 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | het | 71.9569 | 57.6543 | 95.6967 | 78.7456 | 467 | 343 | 467 | 21 | 12 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 63.6364 | 46.6667 | 100.0000 | 88.2022 | 21 | 24 | 21 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | homalt | 74.9478 | 66.4815 | 85.8852 | 77.4663 | 359 | 181 | 359 | 59 | 57 | 96.6102 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | * | 57.0815 | 42.9032 | 85.2564 | 80.1020 | 133 | 177 | 133 | 23 | 21 | 91.3043 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | het | 51.5385 | 34.8958 | 98.5294 | 81.9629 | 67 | 125 | 67 | 1 | 0 | 0.0000 | |