PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75051-75100 / 86044 show all
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.9166
92.5873
97.3660
75.0931
845667784652296
2.6201
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5517
93.3333
100.0000
85.5670
1411400
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.9278
99.0227
93.0204
76.6292
5370535371403345
85.6079
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_11to50*
96.6168
96.8493
96.3855
66.9947
47031534720177125
70.6215
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_11to50het
96.8525
95.1101
98.6600
66.4833
29371512945402
5.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
96.2297
99.8868
92.8310
67.6868
176521774137123
89.7810
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_51to200*
57.1429
53.8462
60.8696
96.6667
14121496
66.6667
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_51to200het
64.2857
52.9412
81.8182
97.0667
98922
100.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
47.6190
55.5556
41.6667
96.1905
54574
57.1429
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
98.7576
98.3503
99.1683
60.5203
10731180107319083
92.2222
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
98.8403
97.7490
99.9563
59.9965
6861158685630
0.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6109
99.4340
97.8014
61.3838
38652238708783
95.4023
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.1967
97.8663
98.5292
39.4229
7293159730210985
77.9817
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.2146
96.7797
99.6928
37.8817
45381514543142
14.2857
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
50.0000
50500
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
98.1641
99.7099
96.6655
41.7144
2750827549583
87.3684
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_51to200*
67.4699
66.6667
68.2927
90.5747
2814281312
92.3077
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_51to200het
74.6313
61.1111
95.8333
91.7241
22142310
0.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
45.4545
100.0000
29.4118
88.2759
6051212
100.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50*
98.1542
97.8551
98.4553
37.1727
33767433785335
66.0377
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50het
98.0340
96.7727
99.3285
36.5490
2069692071140
0.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
98.3434
99.6186
97.1004
38.0755
1306513063935
89.7436
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200*
66.6667
100.0000
50.0000
97.6190
10110
0.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200het
66.6667
100.0000
50.0000
96.2264
10110
0.0000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
mlin-fermikitSNPtvmap_l100_m0_e0*
58.6013
45.6875
81.6920
55.0247
50646020506011341011
89.1534
mlin-fermikitSNPtvmap_l100_m0_e0het
56.5874
39.7258
98.3185
59.7124
286943532865490
0.0000
mlin-fermikitSNPtvmap_l100_m0_e0hetalt
31.5789
18.7500
100.0000
80.0000
313300
mlin-fermikitSNPtvmap_l100_m0_e0homalt
61.5471
56.9943
66.8904
49.7701
21921654219210851011
93.1797
mlin-fermikitSNPtvmap_l100_m1_e0*
70.4651
58.3772
88.8661
53.8051
14303101981429517911587
88.6097
mlin-fermikitSNPtvmap_l100_m1_e0het
69.7650
53.9859
98.5774
56.8653
8323709483151202
1.6667
mlin-fermikitSNPtvmap_l100_m1_e0hetalt
56.1404
39.0244
100.0000
68.6275
16251600
mlin-fermikitSNPtvmap_l100_m1_e0homalt
71.5194
65.9516
78.1139
49.8226
59643079596416711585
94.8534
mlin-fermikitSNPtvmap_l100_m2_e0*
71.0756
59.1180
89.0970
57.6083
14799102341479118101594
88.0663
mlin-fermikitSNPtvmap_l100_m2_e0het
70.4610
54.8457
98.5073
60.6122
8653712486451312
1.5267