PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75001-75050 / 86044 show all
mlin-fermikitSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.0556
99.2366
91.2127
73.6696
52045195040
80.0000
mlin-fermikitSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1160
97.8900
98.3429
64.4756
2709458427122457344
75.2735
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.2029
96.8864
99.5557
62.5968
1702154717030764
5.2632
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
76.7857
1301300
mlin-fermikitSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9682
99.6336
96.3576
67.1524
100603710079381340
89.2388
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.3085
94.9832
95.6360
75.7457
1384073113850632351
55.5380
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.9166
92.5873
97.3660
75.0931
845667784652296
2.6201
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.5517
93.3333
100.0000
85.5670
1411400
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.9278
99.0227
93.0204
76.6292
5370535371403345
85.6079
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.4225
97.6048
97.2409
55.7572
13043213043714
37.8378
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.9376
96.2573
97.6275
55.5145
82332823201
5.0000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.2635
100.0000
96.5863
56.1233
48104811713
76.4706
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.5033
98.3901
98.6169
63.5523
21393521393019
63.3333
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.3986
97.4766
99.3382
61.3636
135235135191
11.1111
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.6834
100.0000
97.4010
66.6941
78607872118
85.7143
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.0251
98.7500
99.3017
67.9499
14221814221010
100.0000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0055
98.0306
100.0000
65.5504
8961889500
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.0584
100.0000
98.1343
71.2755
52505261010
100.0000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
77.7614
75.7576
79.8742
91.5962
125401273221
65.6250
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
80.7834
70.9677
93.7500
90.7514
88369062
33.3333
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
71.1538
90.2439
58.7302
92.5969
374372619
73.0769
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
89.1469
90.2954
88.0272
87.4552
12841381294176110
62.5000
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.8936
85.5422
94.7115
86.1932
781132788444
9.0909
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
84.6154
20200
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
87.9554
98.8166
79.2453
88.8008
5016504132106
80.3030
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
90.4777
92.0158
88.9901
86.8129
1164101117214590
62.0690
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.0443
87.5315
94.8509
85.4150
69599700382
5.2632
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
81.8182
20200
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.6081
99.5736
81.4558
88.2628
467247010788
82.2430
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
95.0821
95.4655
94.7017
82.7295
39581883968222134
60.3604
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
95.2465
93.1191
97.4734
81.1308
24631822469645
7.8125
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
91.4286
30300
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.8031
99.5995
90.4474
84.6880
149261496158129
81.6456