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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74951-75000 / 86044 show all
mlin-fermikitINDELD1_5HG002compoundhethet
59.9144
80.4398
47.7343
63.4097
1390338138015111467
97.0880
mlin-fermikitINDELD1_5HG002compoundhethetalt
80.3857
67.3160
99.7534
60.0394
6877333968771717
100.0000
mlin-fermikitINDELD1_5HG002compoundhethomalt
41.8824
90.7216
27.2257
80.6916
26427263703687
97.7240
mlin-fermikitINDELD1_5decoy*
100.0000
100.0000
100.0000
99.9120
40400
mlin-fermikitINDELD1_5decoyhet
100.0000
100.0000
100.0000
99.9287
20200
mlin-fermikitINDELD1_5decoyhetalt
100.0000
100.0000
100.0000
99.4595
10100
mlin-fermikitINDELD1_5decoyhomalt
100.0000
100.0000
100.0000
99.9357
10100
mlin-fermikitINDELD1_5func_cds*
99.0596
99.3711
98.7500
26.2673
158115821
50.0000
mlin-fermikitINDELD1_5func_cdshet
98.8235
98.8235
98.8235
29.7521
8418410
0.0000
mlin-fermikitINDELD1_5func_cdshetalt
0.0000
100.0000
00000
mlin-fermikitINDELD1_5func_cdshomalt
99.3289
100.0000
98.6667
21.0526
7407411
100.0000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
73.2776
67.1436
80.6452
54.3490
267513092675642605
94.2368
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
79.2712
87.6596
72.3480
57.0624
12361741214464433
93.3190
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
56.8303
39.7366
99.7333
37.6559
724109874822
100.0000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
87.0098
95.0798
80.2025
58.7471
71537713176170
96.5909
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
81.8182
81.8182
81.8182
99.0886
92922
100.0000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
85.7143
75.0000
100.0000
99.1379
62600
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.7742
10100
mlin-fermikitINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
66.6667
100.0000
50.0000
99.1667
20222
100.0000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
94.5891
93.3138
95.8997
71.5881
6012343086006125682492
97.0405
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7763
96.4226
95.1386
69.4450
3204711893201716361576
96.3325
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
82.9460
70.9983
99.7285
65.0277
6600269666111818
100.0000
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.9772
98.0684
95.9100
75.5337
2147642321433914898
98.2495
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
88.2321
85.5737
91.0609
53.6742
2687745312683226342540
96.4313
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
90.3770
92.9127
87.9760
55.1468
127829751273117401664
95.6322
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
78.2556
64.3957
99.7182
32.7011
5983330860151717
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.5003
97.0335
90.2153
59.9508
81122488086877859
97.9475
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
95.1086
93.1759
97.1233
60.7948
710527092117
80.9524
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.1222
94.0230
98.3173
61.3742
4092640974
57.1429
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
77.8761
63.7681
100.0000
58.0952
44254400
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.1544
99.6124
94.8148
60.2941
25712561413
92.8571
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
90.0000
90.0000
90.0000
99.1349
91911
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
92.3077
85.7143
100.0000
99.0964
61600
mlin-fermikitSNPtvHG002complexvarhet
98.0988
96.3081
99.9573
20.3091
1451695565145103629
14.5161
mlin-fermikitSNPtvHG002complexvarhetalt
95.9866
92.5806
99.6528
34.0961
2872328711
100.0000
mlin-fermikitSNPtvHG002complexvarhomalt
98.2029
98.2799
98.1261
24.4893
9347516369347117851729
96.8627
mlin-fermikitSNPtvHG002compoundhet*
91.2208
90.4965
91.9568
50.8884
80758488083707593
83.8755
mlin-fermikitSNPtvHG002compoundhethet
90.8488
84.0146
98.8934
54.3251
39267473932448
18.1818
mlin-fermikitSNPtvHG002compoundhethetalt
97.1360
94.4316
100.0000
20.8171
8144881400
mlin-fermikitSNPtvHG002compoundhethomalt
90.3108
98.4357
83.4250
51.0104
3335533337663585
88.2353
mlin-fermikitSNPtvdecoy*
0.0000
100.0000
00000
mlin-fermikitSNPtvdecoyhet
0.0000
100.0000
00000
mlin-fermikitSNPtvdecoyhetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvdecoyhomalt
0.0000
100.0000
00000
mlin-fermikitSNPtvfunc_cds*
99.2667
99.1078
99.4262
22.7208
43323943322514
56.0000
mlin-fermikitSNPtvfunc_cdshet
99.1679
98.6827
99.6579
21.9982
262235262290
0.0000
mlin-fermikitSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
37.5000
1001000
mlin-fermikitSNPtvfunc_cdshomalt
99.4152
99.7653
99.0676
23.6994
1700417001614
87.5000
mlin-fermikitSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.8184
94.7230
94.9141
71.6532
14368014377743
55.8442
mlin-fermikitSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.6799
92.3387
97.1429
70.2456
91676918273
11.1111