PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
74801-74850 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1485 | 96.6825 | 97.6190 | 55.2239 | 204 | 7 | 205 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 71.5778 | 68.2094 | 75.2961 | 64.2035 | 899 | 419 | 890 | 292 | 290 | 99.3151 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 62.4468 | 81.4917 | 50.6173 | 72.8005 | 295 | 67 | 205 | 200 | 199 | 99.5000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.7419 | 51.2195 | 100.0000 | 45.5901 | 357 | 340 | 438 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.6087 | 95.3668 | 72.8614 | 66.3690 | 247 | 12 | 247 | 92 | 91 | 98.9130 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 81.3153 | 78.8474 | 83.9428 | 62.4516 | 2531 | 679 | 2525 | 483 | 481 | 99.5859 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 74.5853 | 86.8721 | 65.3433 | 69.9161 | 761 | 115 | 609 | 323 | 321 | 99.3808 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 37.6590 | 1078 | 539 | 1225 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1960 | 96.5132 | 81.1986 | 71.1330 | 692 | 25 | 691 | 160 | 160 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 87.1624 | 85.4630 | 88.9307 | 63.9481 | 1652 | 281 | 1655 | 206 | 205 | 99.5146 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 82.2770 | 90.3226 | 75.5474 | 70.8511 | 476 | 51 | 414 | 134 | 133 | 99.2537 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 87.0813 | 77.1186 | 100.0000 | 34.4884 | 728 | 216 | 794 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.2274 | 96.9697 | 86.1272 | 74.9275 | 448 | 14 | 447 | 72 | 72 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 83.4868 | 81.5589 | 85.5080 | 68.6930 | 3317 | 750 | 3316 | 562 | 522 | 92.8826 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 80.6298 | 89.3985 | 73.4276 | 74.6915 | 1189 | 141 | 1039 | 376 | 353 | 93.8830 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 79.5911 | 66.1007 | 100.0000 | 40.0484 | 1090 | 559 | 1238 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.7993 | 95.4044 | 84.8163 | 74.1070 | 1038 | 50 | 1039 | 186 | 169 | 90.8602 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 83.7086 | 81.9364 | 85.5593 | 74.2891 | 4096 | 903 | 4100 | 692 | 601 | 86.8497 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 81.9462 | 89.6097 | 75.4902 | 79.0668 | 1630 | 189 | 1463 | 475 | 410 | 86.3158 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 79.5102 | 66.0798 | 99.7928 | 43.7451 | 1276 | 655 | 1445 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.7219 | 95.2762 | 84.7795 | 79.3418 | 1190 | 59 | 1192 | 214 | 189 | 88.3178 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.3444 | 86.0491 | 88.6792 | 69.8967 | 1542 | 250 | 1551 | 198 | 185 | 93.4343 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 83.9484 | 89.1626 | 79.3103 | 79.1581 | 543 | 66 | 483 | 126 | 115 | 91.2698 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 87.8398 | 78.3163 | 100.0000 | 38.0563 | 614 | 170 | 682 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.9729 | 96.4912 | 84.2795 | 74.3705 | 385 | 14 | 386 | 72 | 70 | 97.2222 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 69.4218 | 66.5306 | 72.5758 | 57.3368 | 489 | 246 | 479 | 181 | 180 | 99.4475 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 48.0237 | 81.0651 | 34.1176 | 68.8073 | 137 | 32 | 58 | 112 | 111 | 99.1071 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 68.3658 | 51.9362 | 100.0000 | 43.6433 | 228 | 211 | 297 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.5000 | 97.6378 | 64.2487 | 59.3684 | 124 | 3 | 124 | 69 | 69 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.1803 | 85.0575 | 89.4118 | 82.8629 | 74 | 13 | 76 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 89.5949 | 92.3077 | 87.0370 | 80.0738 | 48 | 4 | 47 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 58.8235 | 41.6667 | 100.0000 | 70.3704 | 5 | 7 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 91.3043 | 91.3043 | 91.3043 | 88.3838 | 21 | 2 | 21 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.4000 | 64.7059 | 77.1930 | 96.8784 | 44 | 24 | 44 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.6250 | 6 | 3 | 6 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.4211 | 86.6667 | 56.5217 | 98.1437 | 13 | 2 | 13 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 88.3125 | 86.2357 | 90.4918 | 71.6894 | 827 | 132 | 828 | 87 | 68 | 78.1609 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.3380 | 89.7756 | 86.9458 | 76.1737 | 360 | 41 | 353 | 53 | 41 | 77.3585 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 85.7143 | 75.0000 | 100.0000 | 42.9844 | 246 | 82 | 256 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.0757 | 96.0870 | 86.5613 | 76.5524 | 221 | 9 | 219 | 34 | 27 | 79.4118 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 68.8811 | 63.9610 | 74.6212 | 70.9571 | 394 | 222 | 394 | 134 | 130 | 97.0149 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 62.0349 | 81.0976 | 50.2283 | 77.7439 | 133 | 31 | 110 | 109 | 107 | 98.1651 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 64.1239 | 47.4286 | 98.9583 | 48.3871 | 166 | 184 | 190 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.2677 | 93.1373 | 80.3419 | 74.6753 | 95 | 7 | 94 | 23 | 22 | 95.6522 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||