PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74551-74600 / 86044 show all
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
77.6790
63.6186
99.7178
29.4964
4564261045931313
100.0000
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.6150
96.8720
83.3696
61.8257
3066993068612603
98.5294
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
82.6766
79.8823
85.6735
55.5568
1411635551411923612322
98.3482
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
83.0571
91.0366
76.3636
59.1295
5322524529216381616
98.6569
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
77.9120
63.9658
99.6350
31.9608
5155290451861918
94.7368
mlin-fermikitINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.7564
96.6277
83.7975
65.1703
36391273641704688
97.7273
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
84.1619
82.2267
86.1905
45.3886
77771681778312471228
98.4763
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
81.7820
89.5719
75.2387
54.8652
24482852443804793
98.6318
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
83.5892
71.9405
99.7391
27.4753
34331339344199
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
88.5502
97.0814
81.3973
49.1056
1896571899434426
98.1567
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
47.8252
42.6757
54.3879
44.5978
504677502421421
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
31.8686
65.5405
21.0526
51.2162
975176285285
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
44.9406
29.0138
99.6337
37.6712
25361927211
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
68.4444
95.6522
53.2872
40.7787
1547154135135
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
93.3255
91.3534
95.3846
81.6901
243232481211
91.6667
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
95.5612
96.1290
95.0000
81.4600
149615287
87.5000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
70.1754
54.0541
100.0000
66.6667
20172000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.4359
100.0000
95.0000
83.9034
7407644
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
67.9265
61.4035
76.0000
99.4084
3522381211
91.6667
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
70.7177
59.5238
87.0968
98.6964
25172743
75.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
53.3333
44.4444
66.6667
99.0050
45422
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
70.0000
100.0000
53.8462
99.7623
60766
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
89.5692
87.1711
92.1030
51.3163
32144733219276266
96.3768
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
91.1134
93.7764
88.5975
54.4652
15521031554200192
96.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
82.7315
70.7276
99.6429
31.3725
83634683733
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
94.4635
97.1765
91.8979
57.1564
826248287371
97.2603
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
65.2028
60.0760
71.2862
53.7688
790525787317306
96.5300
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
65.2182
88.7879
51.5371
58.1061
29337285268261
97.3881
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
57.6052
40.6053
99.0909
37.5000
32247132732
66.6667
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
84.7458
91.1458
79.1855
59.0741
175171754643
93.4783
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
91.7166
90.1734
93.3134
34.6469
15601701563112110
98.2143
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
92.3787
95.5903
89.3758
38.2787
672316738079
98.7500
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
87.7870
78.7671
99.1398
19.4107
46012446144
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
95.2238
96.6140
93.8731
40.3394
428154292827
96.4286
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
60.2317
54.9296
66.6667
46.3303
7864783938
97.4359
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
53.6585
91.6667
37.9310
51.2605
222223636
100.0000
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
54.1353
37.1134
100.0000
32.0755
36613600
mlin-fermikitINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
90.9091
95.2381
86.9565
50.0000
2012032
66.6667
mlin-fermikitINDELD6_15map_l100_m0_e0*
67.1440
61.1650
74.4186
83.6190
6340642214
63.6364
mlin-fermikitINDELD6_15map_l100_m0_e0het
65.7317
61.6667
70.3704
79.5455
372338169
56.2500
mlin-fermikitINDELD6_15map_l100_m0_e0hetalt
66.6667
52.6316
90.9091
71.7949
1091010
0.0000
mlin-fermikitINDELD6_15map_l100_m0_e0homalt
71.1111
66.6667
76.1905
90.5405
1681655
100.0000
mlin-fermikitINDELD6_15map_l100_m1_e0*
74.6205
69.3798
80.7175
81.6461
179791804333
76.7442
mlin-fermikitINDELD6_15map_l100_m1_e0het
75.2952
75.3968
75.1938
79.7488
9531973223
71.8750
mlin-fermikitINDELD6_15map_l100_m1_e0hetalt
60.5850
44.1176
96.6667
68.7500
30382910
0.0000
mlin-fermikitINDELD6_15map_l100_m1_e0homalt
84.3750
84.3750
84.3750
86.7220
5410541010
100.0000