PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73751-73800 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | * | 77.5709 | 68.5921 | 89.2545 | 77.9440 | 1330 | 609 | 1329 | 160 | 138 | 86.2500 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | het | 76.7833 | 64.0379 | 95.8629 | 77.1351 | 812 | 456 | 811 | 35 | 19 | 54.2857 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 64.0000 | 47.0588 | 100.0000 | 89.0351 | 24 | 27 | 25 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | homalt | 79.7254 | 79.6774 | 79.7735 | 78.1084 | 494 | 126 | 493 | 125 | 119 | 95.2000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | * | 63.8147 | 51.4113 | 84.1060 | 79.6633 | 255 | 241 | 254 | 48 | 41 | 85.4167 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | het | 61.6561 | 45.2174 | 96.8750 | 79.2746 | 156 | 189 | 155 | 5 | 2 | 40.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 97.5000 | 1 | 2 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | homalt | 67.8201 | 66.2162 | 69.5035 | 79.0490 | 98 | 50 | 98 | 43 | 39 | 90.6977 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | * | 69.1865 | 57.9044 | 85.9290 | 78.9897 | 630 | 458 | 629 | 103 | 90 | 87.3786 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | het | 67.0857 | 51.2397 | 97.1204 | 79.0685 | 372 | 354 | 371 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 76.1905 | 61.5385 | 100.0000 | 92.1569 | 8 | 5 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3589 | 71.6332 | 73.0994 | 78.0347 | 250 | 99 | 250 | 92 | 86 | 93.4783 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | * | 70.4052 | 59.2301 | 86.7779 | 80.7464 | 677 | 466 | 676 | 103 | 90 | 87.3786 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | het | 68.6425 | 53.0105 | 97.3494 | 80.9546 | 405 | 359 | 404 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8000 | 9 | 6 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e0 | homalt | 73.1572 | 72.2527 | 74.0845 | 79.6211 | 263 | 101 | 263 | 92 | 86 | 93.4783 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | * | 70.7275 | 59.6370 | 86.8852 | 80.8130 | 690 | 467 | 689 | 104 | 91 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | het | 68.8482 | 53.2468 | 97.3810 | 81.0640 | 410 | 360 | 409 | 11 | 4 | 36.3636 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.0233 | 9 | 6 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.6413 | 72.8495 | 74.4505 | 79.6193 | 271 | 101 | 271 | 93 | 87 | 93.5484 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | * | 60.5938 | 47.4048 | 83.9506 | 83.7513 | 137 | 152 | 136 | 26 | 21 | 80.7692 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | het | 58.0395 | 41.0891 | 98.7952 | 83.7573 | 83 | 119 | 82 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.6522 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0307 | 62.3529 | 67.9487 | 83.1533 | 53 | 32 | 53 | 25 | 21 | 84.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | * | 65.6309 | 53.5565 | 84.7345 | 81.1195 | 384 | 333 | 383 | 69 | 61 | 88.4058 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | het | 63.4051 | 47.0954 | 96.9957 | 81.1030 | 227 | 255 | 226 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 95.7143 | 3 | 4 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m1_e0 | homalt | 69.3694 | 67.5439 | 71.2963 | 80.2016 | 154 | 74 | 154 | 62 | 57 | 91.9355 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | * | 66.8704 | 54.9148 | 85.4806 | 82.9140 | 419 | 344 | 418 | 71 | 63 | 88.7324 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | het | 64.6730 | 48.4436 | 97.2549 | 83.3442 | 249 | 265 | 248 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 60.0000 | 42.8571 | 100.0000 | 96.3415 | 3 | 4 | 3 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e0 | homalt | 70.6131 | 69.0083 | 72.2944 | 81.5052 | 167 | 75 | 167 | 64 | 59 | 92.1875 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | * | 67.1787 | 55.2699 | 85.6287 | 82.9069 | 430 | 348 | 429 | 72 | 64 | 88.8889 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | het | 64.8764 | 48.6590 | 97.3077 | 83.3972 | 254 | 268 | 253 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 95.3488 | 4 | 4 | 4 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l150_m2_e1 | homalt | 70.9278 | 69.3548 | 72.5738 | 81.4699 | 172 | 76 | 172 | 65 | 60 | 92.3077 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | * | 46.3768 | 34.7826 | 69.5652 | 93.9153 | 16 | 30 | 16 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | het | 41.8605 | 27.2727 | 90.0000 | 94.5946 | 9 | 24 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | map_l250_m0_e0 | homalt | 53.8462 | 53.8462 | 53.8462 | 92.8571 | 7 | 6 | 7 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | * | 54.4256 | 40.9357 | 81.1765 | 90.6181 | 70 | 101 | 69 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | het | 46.2394 | 30.6306 | 94.2857 | 92.2566 | 34 | 77 | 33 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 92.8571 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m1_e0 | homalt | 64.7619 | 59.6491 | 70.8333 | 88.7324 | 34 | 23 | 34 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | * | 56.5892 | 42.9348 | 82.9787 | 91.5996 | 79 | 105 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | het | 49.0643 | 33.0579 | 95.1220 | 92.7690 | 40 | 81 | 39 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.0000 | 2 | 1 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e0 | homalt | 66.6667 | 61.6667 | 72.5490 | 90.0391 | 37 | 23 | 37 | 14 | 14 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | * | 56.3873 | 42.7027 | 82.9787 | 91.9105 | 79 | 106 | 78 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l250_m2_e1 | het | 48.7652 | 32.7869 | 95.1220 | 93.0034 | 40 | 82 | 39 | 2 | 0 | 0.0000 | |