PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
73701-73750 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 78.2556 | 64.3957 | 99.7182 | 32.7011 | 5983 | 3308 | 6015 | 17 | 17 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.5003 | 97.0335 | 90.2153 | 59.9508 | 8112 | 248 | 8086 | 877 | 859 | 97.9475 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.5721 | 88.6430 | 92.5871 | 36.0947 | 21753 | 2787 | 21720 | 1739 | 1695 | 97.4698 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.0469 | 94.0521 | 90.1255 | 39.8201 | 9788 | 619 | 9766 | 1070 | 1036 | 96.8224 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 82.8097 | 70.7958 | 99.7345 | 26.8052 | 4875 | 2011 | 4883 | 13 | 13 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.5664 | 97.8336 | 91.5103 | 35.6834 | 7090 | 157 | 7071 | 656 | 646 | 98.4756 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 41.4591 | 33.4290 | 54.5667 | 44.1830 | 233 | 464 | 233 | 194 | 191 | 98.4536 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.1619 | 58.5185 | 31.7460 | 42.9003 | 79 | 56 | 60 | 129 | 126 | 97.6744 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 31.5161 | 18.7373 | 99.1071 | 42.5641 | 92 | 399 | 111 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.9442 | 87.3239 | 49.2063 | 47.2803 | 62 | 9 | 62 | 64 | 64 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.6770 | 98.2373 | 99.1206 | 53.5009 | 24912 | 447 | 24909 | 221 | 216 | 97.7376 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6655 | 98.1110 | 99.2262 | 52.5551 | 14491 | 279 | 14491 | 113 | 109 | 96.4602 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.9599 | 92.4574 | 99.7382 | 69.8024 | 380 | 31 | 381 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.7994 | 98.6540 | 98.9452 | 53.8867 | 10041 | 137 | 10037 | 107 | 106 | 99.0654 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9973 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 33.3333 | 99.9675 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.6745 | 93.2968 | 96.0934 | 44.0771 | 11079 | 796 | 11069 | 450 | 425 | 94.4444 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.6924 | 96.0989 | 95.2894 | 42.1888 | 6454 | 262 | 6453 | 319 | 300 | 94.0439 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.8710 | 72.2706 | 99.9075 | 34.6038 | 1079 | 414 | 1080 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 96.5901 | 96.7267 | 96.4539 | 49.3016 | 3546 | 120 | 3536 | 130 | 124 | 95.3846 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 69.4588 | 63.4740 | 76.6895 | 52.7315 | 782 | 450 | 783 | 238 | 217 | 91.1765 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.8152 | 89.0909 | 63.0112 | 55.9378 | 343 | 42 | 339 | 199 | 180 | 90.4523 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 56.8282 | 39.6923 | 100.0000 | 35.3808 | 258 | 392 | 263 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.8106 | 91.8782 | 82.2727 | 58.6466 | 181 | 16 | 181 | 39 | 37 | 94.8718 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.7607 | 94.8001 | 96.7410 | 36.3288 | 3865 | 212 | 3859 | 130 | 125 | 96.1538 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.3317 | 97.1116 | 95.5642 | 35.5358 | 2219 | 66 | 2219 | 103 | 98 | 95.1456 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.0062 | 74.2424 | 99.4203 | 29.8780 | 343 | 119 | 343 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0394 | 97.9699 | 98.1089 | 39.1064 | 1303 | 27 | 1297 | 25 | 25 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 58.9928 | 54.6667 | 64.0625 | 54.2857 | 41 | 34 | 41 | 23 | 22 | 95.6522 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.5217 | 100.0000 | 39.3939 | 54.1667 | 13 | 0 | 13 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 51.5152 | 34.6939 | 100.0000 | 32.0000 | 17 | 32 | 17 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 81.4815 | 84.6154 | 78.5714 | 67.4419 | 11 | 2 | 11 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | * | 68.2636 | 57.4739 | 84.0407 | 76.2404 | 496 | 367 | 495 | 94 | 78 | 82.9787 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | het | 66.7367 | 51.2690 | 95.5696 | 76.0968 | 303 | 288 | 302 | 14 | 4 | 28.5714 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 90.4110 | 7 | 7 | 7 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.9924 | 72.0930 | 69.9248 | 75.4613 | 186 | 72 | 186 | 80 | 74 | 92.5000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | * | 76.7469 | 67.5325 | 88.8730 | 76.4647 | 1248 | 600 | 1246 | 156 | 136 | 87.1795 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | het | 75.8984 | 62.7792 | 95.9494 | 75.4582 | 759 | 450 | 758 | 32 | 18 | 56.2500 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 63.7681 | 46.8085 | 100.0000 | 89.1089 | 22 | 25 | 22 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.9341 | 78.8851 | 78.9831 | 76.7350 | 467 | 125 | 466 | 124 | 118 | 95.1613 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | * | 77.4662 | 68.4073 | 89.2906 | 77.7912 | 1310 | 605 | 1309 | 157 | 136 | 86.6242 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | het | 76.7082 | 63.8535 | 96.0432 | 76.9422 | 802 | 454 | 801 | 33 | 18 | 54.5455 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 62.8571 | 45.8333 | 100.0000 | 89.5928 | 22 | 26 | 23 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e0 | homalt | 79.5902 | 79.5417 | 79.6388 | 77.9587 | 486 | 125 | 485 | 124 | 118 | 95.1613 | |